PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010923870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NF-YC | ||||||||
Protein Properties | Length: 247aa MW: 28406.1 Da PI: 4.6848 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 160.6 | 2.4e-50 | 72 | 174 | 2 | 101 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 l++fw++q i +tdfknh+lPlarikki+kadedv+mi+aeaPvl+++ace+filelt rsw ++e+nkrrtl+k+dia a+trtd+fdflv XP_010923870.1 72 LRMFWASQyqeILATTDFKNHSLPLARIKKIMKADEDVRMIAAEAPVLFARACEMFILELTYRSWAQTEDNKRRTLHKNDIAGAITRTDVFDFLV 166 89****996666689******************************************************************************** PP NF-YC 94 divprdel 101 d+vpr++l XP_010923870.1 167 DVVPREDL 174 *****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.85E-29 | 71 | 165 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-20 | 93 | 156 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.5E-35 | 94 | 171 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDNPGQGQPP VTDAVHIPYI DMPYQDNQMM GSNVPISSSQ LTTAASQVQL AQHQLFYQRI 60 QKQQLQQLDQ TLRMFWASQY QEILATTDFK NHSLPLARIK KIMKADEDVR MIAAEAPVLF 120 ARACEMFILE LTYRSWAQTE DNKRRTLHKN DIAGAITRTD VFDFLVDVVP REDLKEEVNA 180 NDSLAHYYAS PQVGSLGMIM NKPGVDQDLL YAQMPQPYVP QQFWEQQQTI QQQQPQHQEQ 240 QPGEDLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-54 | 78 | 171 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923870.1 | 0.0 | nuclear transcription factor Y subunit C-3 | ||||
Swissprot | Q9ZVL3 | 3e-65 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A2H3ZYK8 | 1e-128 | A0A2H3ZYK8_PHODC; nuclear transcription factor Y subunit C-3-like | ||||
STRING | XP_008806484.1 | 1e-129 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3856 | 36 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 8e-64 | nuclear factor Y, subunit C3 |