PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010923867.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 468aa MW: 49836.1 Da PI: 6.5858 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ + g++R++k+c++rw ++l XP_010923867.1 17 KGPWTAAEDAILMEYVKKHGEGNWNAVQKNSGLNRCGKSCRLRWANHL 64 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 48.8 | 1.6e-15 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g +T eE++l++++++qlG++ W++ a+ ++ gRt++++k++w++ XP_010923867.1 70 KGTFTREEELLILHLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 113 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 12 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.642 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.62E-30 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-15 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-16 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-11 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 24.617 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-24 | 68 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-14 | 70 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.31E-11 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MKSGGGAEES SAAALKKGPW TAAEDAILME YVKKHGEGNW NAVQKNSGLN RCGKSCRLRW 60 ANHLRPDLKK GTFTREEELL ILHLHAQLGN KWARMAAQLP GRTDNEIKNY WNTRIKRRKR 120 AGLPLYPPEI QRQVLLRHGY HLRPTAASSS ASPGPPAPLP ASVPRARLRP PPLSLMHPIS 180 FPSSPSPTAA FSPSPSATAP IPVVAQNQFS SGLPSQFPLS SPVLSPASPL FQSQQQQQLQ 240 FSVSCPVSPT PPSPLFQLQQ PMHCNLGSFD VNPSPSSAQM PFTGELPSSQ ILGETGGGCG 300 GGAIGLLRSS STGLLDDMIR ELQRDVDIPR VDLQPQPPAA AAVEGGDGHP GGNEVSKDGT 360 FSPVQGSVQE SLSKLDGSDS SINGTEMRSK ATNEISGVHD DISMLLDAIP APTMPATMVA 420 PDWYNSDSGE ISNGPSSVMT DDDIGLEMHQ LASSLSIAPV DQEWNLSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-32 | 15 | 118 | 5 | 107 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923867.1 | 0.0 | transcription factor MYB97 | ||||
TrEMBL | A0A2H3Z4W0 | 0.0 | A0A2H3Z4W0_PHODC; LOW QUALITY PROTEIN: transcription factor MYB97 | ||||
STRING | XP_008808424.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7420 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 9e-69 | myb domain protein 101 |