PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923867.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 468aa    MW: 49836.1 Da    PI: 6.5858
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923867.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l ++vk++G g+W+++ +  g++R++k+c++rw ++l
   XP_010923867.1 17 KGPWTAAEDAILMEYVKKHGEGNWNAVQKNSGLNRCGKSCRLRWANHL 64
                     79******************************************9986 PP

2Myb_DNA-binding48.81.6e-1570113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g +T eE++l++++++qlG++ W++ a+ ++ gRt++++k++w++
   XP_010923867.1  70 KGTFTREEELLILHLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 113
                      799*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-241267IPR009057Homeodomain-like
PROSITE profilePS5129417.6421264IPR017930Myb domain
SuperFamilySSF466892.62E-3015111IPR009057Homeodomain-like
SMARTSM007172.6E-151666IPR001005SANT/Myb domain
PfamPF002496.3E-161764IPR001005SANT/Myb domain
CDDcd001671.23E-111964No hitNo description
PROSITE profilePS5129424.61765119IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-2468118IPR009057Homeodomain-like
SMARTSM007176.5E-1569117IPR001005SANT/Myb domain
PfamPF002494.3E-1470113IPR001005SANT/Myb domain
CDDcd001679.31E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MKSGGGAEES SAAALKKGPW TAAEDAILME YVKKHGEGNW NAVQKNSGLN RCGKSCRLRW  60
ANHLRPDLKK GTFTREEELL ILHLHAQLGN KWARMAAQLP GRTDNEIKNY WNTRIKRRKR  120
AGLPLYPPEI QRQVLLRHGY HLRPTAASSS ASPGPPAPLP ASVPRARLRP PPLSLMHPIS  180
FPSSPSPTAA FSPSPSATAP IPVVAQNQFS SGLPSQFPLS SPVLSPASPL FQSQQQQQLQ  240
FSVSCPVSPT PPSPLFQLQQ PMHCNLGSFD VNPSPSSAQM PFTGELPSSQ ILGETGGGCG  300
GGAIGLLRSS STGLLDDMIR ELQRDVDIPR VDLQPQPPAA AAVEGGDGHP GGNEVSKDGT  360
FSPVQGSVQE SLSKLDGSDS SINGTEMRSK ATNEISGVHD DISMLLDAIP APTMPATMVA  420
PDWYNSDSGE ISNGPSSVMT DDDIGLEMHQ LASSLSIAPV DQEWNLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-32151185107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923867.10.0transcription factor MYB97
TrEMBLA0A2H3Z4W00.0A0A2H3Z4W0_PHODC; LOW QUALITY PROTEIN: transcription factor MYB97
STRINGXP_008808424.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.29e-69myb domain protein 101