PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923838.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 327aa    MW: 36731.4 Da    PI: 6.737
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923838.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv++++ +G g+W+++++  g+ R++k+c++rw +yl
   XP_010923838.1 13 RGLWSPEEDEKLVKYITTHGHGCWSSVPKQAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding51.32.6e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++
   XP_010923838.1  66 RGSFSAQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-27463IPR009057Homeodomain-like
PROSITE profilePS5129418.808860IPR017930Myb domain
SuperFamilySSF466894.12E-2910107IPR009057Homeodomain-like
SMARTSM007171.5E-131262IPR001005SANT/Myb domain
PfamPF002493.6E-161360IPR001005SANT/Myb domain
CDDcd001676.73E-121660No hitNo description
PROSITE profilePS5129425.75761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2564116IPR009057Homeodomain-like
SMARTSM007178.8E-1665113IPR001005SANT/Myb domain
PfamPF002491.0E-1466109IPR001005SANT/Myb domain
CDDcd001679.65E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLVKYITT HGHGCWSSVP KQAGLQRCGK SCRLRWINYL  60
RPDLKRGSFS AQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPKTHNLIPT ARPNNSINSA NISQFHHPHS STTPFTISSP NKSFETATPM DMNPPLVTVP  180
PPPTLPLHET IPISTFQYQD ANVLMSFKDQ NCHTSIDFTH GSSSLDQTNM SSSSFHQPGF  240
MDDCMWASTV EPLEAPRQNE VEFQQGQGQA QPLACKMDFD GPNEEKGLEM ESSYNSSTFD  300
IELMESALMP SGIFCGGSSI EQLQWDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923838.10.0myb-related protein 330
TrEMBLA0A2H3YH420.0A0A2H3YH42_PHODC; transcription factor MYB26-like
STRINGXP_008798713.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.15e-84myb domain protein 67