PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010923817.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TCP | ||||||||
Protein Properties | Length: 445aa MW: 47686.5 Da PI: 7.5401 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 129.9 | 2.4e-40 | 72 | 214 | 2 | 131 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec...eaesssssasn 84 g+kdrhsk++T++g+RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a +ai el+ + + ++++ +++ + s ++ XP_010923817.1 72 SGGKDRHSKVYTAKGLRDRRVRLSVSTAIQFYDLQDRLGFDQPSKAIEWLIKAAAAAINELPALgdtfpeapkPRRPEEKLpeePDAEAEHSFNQ 166 689*************************************************************9988777663333333354433344444444 PP TCP 85 sssgkaaksaakskksqksaasalnlak.esrakarararertrekmr 131 ++++ + +++ +s++s++s+ s+l+l++ e r kar+rarer ++k XP_010923817.1 167 QQQHLSLSKSGCSSNSETSKGSVLSLSRsEIRVKARERARERAKDKED 214 5555677788899999999999******99************999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.2E-40 | 73 | 213 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.35 | 74 | 132 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.594 | 195 | 212 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MEVEENHACK RSRVGNGTVS SSQAARIGCK AQHQDDDEED GEGRGGGGVT GESLVMPWHH 60 PSSRIFRVSR ASGGKDRHSK VYTAKGLRDR RVRLSVSTAI QFYDLQDRLG FDQPSKAIEW 120 LIKAAAAAIN ELPALGDTFP EAPKPRRPEE KLPEEPDAEA EHSFNQQQQH LSLSKSGCSS 180 NSETSKGSVL SLSRSEIRVK ARERARERAK DKEDRDDGHV AVSHHQNVNP SLNSQTSFTE 240 LLTGGGSSNG TSVATAQANS DVNCIQKQMR HLTTVTTTAD YFGQAGLLPQ AQKAHQLPSG 300 FLSQAHFGNS SPIGMVPFNI VAAAAAAGDQ SEMQQFAFLQ DHLMPASAVA AAAGDYNLNF 360 PIPSGVAGFN RGTLQSNSQS QLPHHHLQRL SSAVDGSNLS FFGSAASAAA ATSTENQFSA 420 GFDARLQLCY GHGYRHSDLK GKGKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-25 | 79 | 133 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-25 | 79 | 133 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923815.1 | 0.0 | transcription factor PCF6 | ||||
Refseq | XP_010923816.1 | 0.0 | transcription factor PCF6 | ||||
Refseq | XP_010923817.1 | 0.0 | transcription factor PCF6 | ||||
Refseq | XP_029120892.1 | 0.0 | transcription factor PCF6 | ||||
TrEMBL | A0A2H3ZRV4 | 0.0 | A0A2H3ZRV4_PHODC; transcription factor PCF6 | ||||
STRING | XP_008794502.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-47 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |