PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923817.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 445aa    MW: 47686.5 Da    PI: 7.5401
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923817.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.92.4e-40722142131
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec...eaesssssasn 84 
                      g+kdrhsk++T++g+RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a +ai el+ +         +  ++++     +++ + s ++
  XP_010923817.1  72 SGGKDRHSKVYTAKGLRDRRVRLSVSTAIQFYDLQDRLGFDQPSKAIEWLIKAAAAAINELPALgdtfpeapkPRRPEEKLpeePDAEAEHSFNQ 166
                     689*************************************************************9988777663333333354433344444444 PP

             TCP  85 sssgkaaksaakskksqksaasalnlak.esrakarararertrekmr 131
                     ++++ + +++ +s++s++s+ s+l+l++ e r kar+rarer ++k  
  XP_010923817.1 167 QQQHLSLSKSGCSSNSETSKGSVLSLSRsEIRVKARERARERAKDKED 214
                     5555677788899999999999******99************999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-4073213IPR005333Transcription factor, TCP
PROSITE profilePS5136933.3574132IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.594195212IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEVEENHACK RSRVGNGTVS SSQAARIGCK AQHQDDDEED GEGRGGGGVT GESLVMPWHH  60
PSSRIFRVSR ASGGKDRHSK VYTAKGLRDR RVRLSVSTAI QFYDLQDRLG FDQPSKAIEW  120
LIKAAAAAIN ELPALGDTFP EAPKPRRPEE KLPEEPDAEA EHSFNQQQQH LSLSKSGCSS  180
NSETSKGSVL SLSRSEIRVK ARERARERAK DKEDRDDGHV AVSHHQNVNP SLNSQTSFTE  240
LLTGGGSSNG TSVATAQANS DVNCIQKQMR HLTTVTTTAD YFGQAGLLPQ AQKAHQLPSG  300
FLSQAHFGNS SPIGMVPFNI VAAAAAAGDQ SEMQQFAFLQ DHLMPASAVA AAAGDYNLNF  360
PIPSGVAGFN RGTLQSNSQS QLPHHHLQRL SSAVDGSNLS FFGSAASAAA ATSTENQFSA  420
GFDARLQLCY GHGYRHSDLK GKGKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2579133155Putative transcription factor PCF6
5zkt_B1e-2579133155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923815.10.0transcription factor PCF6
RefseqXP_010923816.10.0transcription factor PCF6
RefseqXP_010923817.10.0transcription factor PCF6
RefseqXP_029120892.10.0transcription factor PCF6
TrEMBLA0A2H3ZRV40.0A0A2H3ZRV4_PHODC; transcription factor PCF6
STRINGXP_008794502.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-47TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2