PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923684.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 282aa    MW: 30619.4 Da    PI: 9.6248
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923684.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81e-12130174347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
   XP_010923684.1 130 PWTEEEHRLFLLGLSKFGKGDWRSISRNFVISRTPTQVASHAQKY 174
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.6561273IPR017884SANT domain
SMARTSM007170.0211371IPR001005SANT/Myb domain
SuperFamilySSF466896.32E-81676IPR009057Homeodomain-like
CDDcd001675.59E-51665No hitNo description
PROSITE profilePS5129416.819123179IPR017930Myb domain
SuperFamilySSF466898.61E-17125180IPR009057Homeodomain-like
SMARTSM007178.5E-11127177IPR001005SANT/Myb domain
TIGRFAMsTIGR015576.5E-17127177IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.8E-11128173IPR009057Homeodomain-like
PfamPF002494.2E-11130174IPR001005SANT/Myb domain
CDDcd001673.87E-10130175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSSAAAADSG GGGEASWNRE EEKAFENALA MVVRPVKTEE GEDGWWELIT ERVPGKTVAQ  60
VRRHYEILVE DVKAIEAGRV PIPRYVGEDS AAASKEKDHH HGLGGDRRFE MGGQGKSLSK  120
SEQERRKGIP WTEEEHRLFL LGLSKFGKGD WRSISRNFVI SRTPTQVASH AQKYFIRLNS  180
MNRDRRRSSI HDITSVNGGD VSSPQGAITG QGNANSAAGG SSMKHPSQPN MSTVGMFGPS  240
VGHPVAAHMV SAAGARVMLP PHHAPYVMPV AYPVPPPTTM HQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923684.10.0transcription factor MYBS1
SwissprotB8A9B22e-91MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH592e-91MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A2H3X3J51e-152A0A2H3X3J5_PHODC; transcription factor MYBS1
STRINGXP_008777770.11e-153(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94663041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-66MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]