PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923678.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 855aa    MW: 93481.7 Da    PI: 6.6817
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923678.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-182683457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_010923678.1 26 YVRYTPEQVEALERVYSECPKPSSMRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 83
                    6789****************************************************97 PP
2START167.68.3e-531743812204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g ++l+
  XP_010923678.1 174 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLDVLTVIPTGngGNIELI 267
                     68999*****************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p     ++++Rae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l+
  XP_010923678.1 268 YMQTYAPTTLASaRDFWTLRYTTGLEDGSLVICERSLTPSTGGPAgppAPNFIRAEMLPSGYLIRPCEGGGSMIHIVDHIDLDAWSVPEVLRPLY 362
                     ***************************************999998888*********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s  + ++k++ a+l++ +
  XP_010923678.1 363 ESPKILAQKMTIAALRHIR 381
                     **************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-19983IPR009057Homeodomain-like
PROSITE profilePS5007115.5322084IPR001356Homeobox domain
SMARTSM003892.3E-152288IPR001356Homeobox domain
CDDcd000861.36E-162585No hitNo description
SuperFamilySSF466899.41E-172587IPR009057Homeodomain-like
PfamPF000463.5E-162683IPR001356Homeobox domain
CDDcd146861.81E-677116No hitNo description
PROSITE profilePS5084825.78164364IPR002913START domain
CDDcd088758.65E-69168384No hitNo description
Gene3DG3DSA:3.30.530.205.7E-24172364IPR023393START-like domain
SMARTSM002341.6E-47173383IPR002913START domain
PfamPF018521.1E-50174381IPR002913START domain
SuperFamilySSF559615.77E-39174384No hitNo description
PfamPF086708.4E-52711854IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MAMVVAGQGG GKEAGKLQQG MDAGKYVRYT PEQVEALERV YSECPKPSSM RRQQLIRECP  60
ILANIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSHLVY  120
ENGYMRQQLH NAPVATTDTS CESVVTSGQH HHQQNPTPQH PQRDANNPAG LLAIAEETLA  180
EFLSKATGTA VDWVQMVGMK PGPDSIGIIA VSHNCSGVAA RACGLVSLEP TKVAEILKDR  240
PSWYRDCRCL DVLTVIPTGN GGNIELIYMQ TYAPTTLASA RDFWTLRYTT GLEDGSLVIC  300
ERSLTPSTGG PAGPPAPNFI RAEMLPSGYL IRPCEGGGSM IHIVDHIDLD AWSVPEVLRP  360
LYESPKILAQ KMTIAALRHI RQIALETSGE ISYGGGRQPA VLRTFSQRLS RGFNDAVNGF  420
VDDGWSLMGS DGVEDVTIAI NSSPNKLLGS HVNSSTMFSA MGGGILCAKA SMLLQNVPPA  480
LLVRFLREHR SEWADCGVDA YSAASLRACP YAVPGVRASS GFLGGQVILP LAHTIEHEEF  540
LEVIRLEGHG FNQEEAVLSR DMYLLQLCSG VDENAVGACA QLVFAPIDES FADDAPLLPS  600
GFRVIPLDPK TDAPTANRTL DLASTLEVGS GAAARSSSEN ASNTYNLRSV LTIAFQFTYE  660
NHLRESVAAM ARQYVRSVVA SVQRVAMAIA PSRLGSQIGM KHPPGSPEAH TLARWISRSY  720
RFHTGVDLLR ADSQAGSDSL LKLLWHHSDA IMCCSLKSSP VFTFANQAGL DMLETTLIAL  780
QDITLEKILD DSGRKVLCSE FTKMMQQGFA YLPAGICLSS MGRPVSYEQA VAWKVLNEED  840
SHHCLAFMFM NWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923678.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2H3Y7760.0A0A2H3Y776_PHODC; homeobox-leucine zipper protein HOX32
STRINGXP_008794452.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]