PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010923674.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NF-YA | ||||||||
Protein Properties | Length: 241aa MW: 26405 Da PI: 6.8669 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105.1 | 6.1e-33 | 102 | 158 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +++rkpylheSRh hAl+R+RgsgGrF XP_010923674.1 102 EEPVYVNAKQYHGILRRRQSRAKAESENKL-IRTRKPYLHESRHLHALKRARGSGGRF 158 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.8E-37 | 100 | 161 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.375 | 101 | 161 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.1E-28 | 103 | 158 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.2E-24 | 104 | 126 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 106 | 126 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 4.2E-24 | 135 | 158 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MTSSVHSISD GGRPDEQQKQ TQPEVQQQAP ATGNFQPGMA TPVGFMISPG HLEAGHAVAP 60 IAYPFVDPYY GGVFAAYGQT VIHPQMMGMH HAGVPLPAEA VEEPVYVNAK QYHGILRRRQ 120 SRAKAESENK LIRTRKPYLH ESRHLHALKR ARGSGGRFLN SKSQGNQQNS NSKSEEDQEN 180 EVASRDRAQP SNNPASDNLC SKNQQNAAVS DDREKPVNLT DSDKSSLDNE PEATSNLLVQ 240 E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-21 | 101 | 164 | 1 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923674.1 | 1e-180 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Swissprot | Q84JP1 | 1e-52 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A2H3Y7S2 | 1e-140 | A0A2H3Y7S2_PHODC; nuclear transcription factor Y subunit A-7-like | ||||
STRING | XP_008794453.1 | 1e-140 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6555 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 4e-47 | nuclear factor Y, subunit A7 |
Publications ? help Back to Top | |||
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