PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923664.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 300aa    MW: 33359.5 Da    PI: 10.2288
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923664.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l  +v ++G g W+tI +          R+  ++k++w++
   XP_010923664.1  5 KQKWTAEEEAALRAGVVKHGAGKWRTILKDPEfsavlRLRSNVDLKDKWRN 55
                     79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.354161IPR017930Myb domain
SuperFamilySSF466891.27E-15271IPR009057Homeodomain-like
SMARTSM007172.2E-6459IPR001005SANT/Myb domain
PfamPF002496.4E-8555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-13556IPR009057Homeodomain-like
CDDcd116602.15E-17656No hitNo description
SMARTSM005261.2E-17119184IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.16E-18119198IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.874121189IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.5E-16122191IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005388.8E-10126182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALRAGV VKHGAGKWRT ILKDPEFSAV LRLRSNVDLK DKWRNMSVTA  60
NGWGSREKAR IALKKSRQIS KHNDNPKVLT TEVEDIDNEI VDAKHLAMSS ESLKFTGPKR  120
SISRLDNLIM EAITNLKEPT GSNKTAIAMY IEEQYWLPPD FKQLLSAKLK VLTASGKLIK  180
VKRKYRITPS SAFSERRNSK VSLLEEMKLE PPKLERDDIK LLTKAQVDAE LAQMRNLTAE  240
EAAAVAAKAV SEAEVAIKEA EEAAREAEVA EAEAEAAKAF AEAAISTLKR RNAAKLMIRV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923664.10.0single myb histone 6 isoform X3
SwissprotC0HIA32e-98SMH6_MAIZE; Single myb histone 6
TrEMBLA0A2H3Y7J31e-161A0A2H3Y7J3_PHODC; single myb histone 6-like isoform X2
STRINGXP_008794468.11e-162(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-85telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]