PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010923663.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 306aa MW: 33901.1 Da PI: 9.7721 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36 | 1.6e-11 | 39 | 89 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l +v ++G g W+tI + R+ ++k++w++ XP_010923663.1 39 KQKWTAEEEAALRAGVVKHGAGKWRTILKDPEfsavlRLRSNVDLKDKWRN 89 79***********************************99***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.089 | 34 | 95 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.42E-15 | 36 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-6 | 38 | 93 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-8 | 39 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-13 | 39 | 90 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 7.14E-18 | 40 | 90 | No hit | No description |
SuperFamily | SSF46785 | 3.54E-7 | 153 | 191 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.6E-7 | 156 | 193 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 9.7E-5 | 160 | 194 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MICDLFICLR IDVGVHVSGF ASLDSSGRVL WLFSMGAPKQ KWTAEEEAAL RAGVVKHGAG 60 KWRTILKDPE FSAVLRLRSN VDLKDKWRNM SVTANGWGSR EKARIALKKS RQISKHNDNP 120 KVLTTEVEDI DNEIVDAKHL AMSSESLKFT GPKRSISRLD NLIMEAITNL KEPTGSNKTA 180 IAMYIEVKRK YRITPSSAFS ERRNSKVSLL EEMKLEPPKL ERDDIKLLTK AQVDAELAQM 240 RNLTAEEAAA VAAKAVSEAE VAIKEAEEAA REAEVAEAEA EAAKAFAEAA ISTLKRRNAA 300 KLMIRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00607 | ChIP-seq | Transfer from AT1G49950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923663.1 | 0.0 | single myb histone 6 isoform X2 | ||||
Swissprot | C0HIA3 | 8e-76 | SMH6_MAIZE; Single myb histone 6 | ||||
TrEMBL | A0A2H3Y7J3 | 1e-135 | A0A2H3Y7J3_PHODC; single myb histone 6-like isoform X2 | ||||
STRING | XP_008794468.1 | 1e-136 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 4e-64 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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