PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923662.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 334aa    MW: 37098.9 Da    PI: 10.0045
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923662.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.8e-113989146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l  +v ++G g W+tI +          R+  ++k++w++
   XP_010923662.1 39 KQKWTAEEEAALRAGVVKHGAGKWRTILKDPEfsavlRLRSNVDLKDKWRN 89
                     79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.0893495IPR017930Myb domain
SuperFamilySSF466891.64E-1536105IPR009057Homeodomain-like
SMARTSM007172.2E-63893IPR001005SANT/Myb domain
PfamPF002497.6E-83989IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-133990IPR009057Homeodomain-like
CDDcd116601.21E-174090No hitNo description
SuperFamilySSF467853.86E-18153232IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.2E-17153218IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.874155223IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.9E-16156225IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.0E-9160216IPR005818Linker histone H1/H5, domain H15
CDDcd000734.61E-10161216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MICDLFICLR IDVGVHVSGF ASLDSSGRVL WLFSMGAPKQ KWTAEEEAAL RAGVVKHGAG  60
KWRTILKDPE FSAVLRLRSN VDLKDKWRNM SVTANGWGSR EKARIALKKS RQISKHNDNP  120
KVLTTEVEDI DNEIVDAKHL AMSSESLKFT GPKRSISRLD NLIMEAITNL KEPTGSNKTA  180
IAMYIEEQYW LPPDFKQLLS AKLKVLTASG KLIKVKRKYR ITPSSAFSER RNSKVSLLEE  240
MKLEPPKLER DDIKLLTKAQ VDAELAQMRN LTAEEAAAVA AKAVSEAEVA IKEAEEAARE  300
AEVAEAEAEA AKAFAEAAIS TLKRRNAAKL MIRV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923662.10.0single myb histone 5 isoform X1
SwissprotC0HIA39e-98SMH6_MAIZE; Single myb histone 6
TrEMBLA0A2H3Y7J31e-160A0A2H3Y7J3_PHODC; single myb histone 6-like isoform X2
STRINGXP_008794468.11e-160(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-84telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]