PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010923638.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 277aa MW: 31823.9 Da PI: 8.7729 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.2 | 2.8e-30 | 36 | 86 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+g+l+e++s XP_010923638.1 36 KRIENKINRQVTFAKRRNGLLKKAFELSVLCDAEVALIIFSSRGRLFEFCS 86 79***********************************************96 PP | |||||||
2 | K-box | 97.3 | 2.3e-32 | 108 | 200 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ +++ ++ +qe+ +Lk+++e Lq++qR+llGedL++Ls +eL qLe+qLekslk+iRs K++ +l+q+ +l+++e+e+qe+n++L++kl e XP_010923638.1 108 AAPSSEIQNTYQEYVRLKARVEFLQHSQRNLLGEDLDPLSTNELDQLENQLEKSLKQIRSAKTQSMLDQLCDLKRREQEMQETNRSLNRKLRE 200 4678999**********************************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.7E-40 | 28 | 87 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.758 | 28 | 88 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.06E-32 | 29 | 104 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 30 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-31 | 30 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.51E-40 | 33 | 102 | No hit | No description |
Pfam | PF00319 | 5.9E-25 | 37 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-31 | 50 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-31 | 65 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-27 | 111 | 198 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.514 | 114 | 204 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 277 aa Download sequence Send to blast |
MEQYLSHSYL RLLAFLYLFW WSRRREEMGR GRVELKRIEN KINRQVTFAK RRNGLLKKAF 60 ELSVLCDAEV ALIIFSSRGR LFEFCSSSSM LKTLERYQRC NYSASEAAAP SSEIQNTYQE 120 YVRLKARVEF LQHSQRNLLG EDLDPLSTNE LDQLENQLEK SLKQIRSAKT QSMLDQLCDL 180 KRREQEMQET NRSLNRKLRE AASQNPLQLT WANGSGDHAA GSSNGPCNRE AALSRGFFQP 240 LACHPPEQIG YHPVNIDQPN GGAMSHDSNG YLPAWMG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 4e-24 | 102 | 198 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 4e-24 | 102 | 198 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 4e-24 | 102 | 198 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 4e-24 | 102 | 198 | 1 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923638.1 | 0.0 | MADS-box protein EJ2 | ||||
Swissprot | Q8LLR2 | 1e-108 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | Q5K6A2 | 0.0 | Q5K6A2_ELAGV; MADS box transcription factor | ||||
STRING | XP_008786031.1 | 1e-141 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2221 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-83 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|