PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923638.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 277aa    MW: 31823.9 Da    PI: 8.7729
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923638.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.22.8e-303686151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+g+l+e++s
  XP_010923638.1 36 KRIENKINRQVTFAKRRNGLLKKAFELSVLCDAEVALIIFSSRGRLFEFCS 86
                    79***********************************************96 PP

2K-box97.32.3e-321082008100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++ +++ ++ +qe+ +Lk+++e Lq++qR+llGedL++Ls +eL qLe+qLekslk+iRs K++ +l+q+ +l+++e+e+qe+n++L++kl e
  XP_010923638.1 108 AAPSSEIQNTYQEYVRLKARVEFLQHSQRNLLGEDLDPLSTNELDQLENQLEKSLKQIRSAKTQSMLDQLCDLKRREQEMQETNRSLNRKLRE 200
                     4678999**********************************************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.7E-402887IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.7582888IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-3229104IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003084IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-313050IPR002100Transcription factor, MADS-box
CDDcd002651.51E-4033102No hitNo description
PfamPF003195.9E-253784IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-315065IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-316586IPR002100Transcription factor, MADS-box
PfamPF014861.5E-27111198IPR002487Transcription factor, K-box
PROSITE profilePS5129715.514114204IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEQYLSHSYL RLLAFLYLFW WSRRREEMGR GRVELKRIEN KINRQVTFAK RRNGLLKKAF  60
ELSVLCDAEV ALIIFSSRGR LFEFCSSSSM LKTLERYQRC NYSASEAAAP SSEIQNTYQE  120
YVRLKARVEF LQHSQRNLLG EDLDPLSTNE LDQLENQLEK SLKQIRSAKT QSMLDQLCDL  180
KRREQEMQET NRSLNRKLRE AASQNPLQLT WANGSGDHAA GSSNGPCNRE AALSRGFFQP  240
LACHPPEQIG YHPVNIDQPN GGAMSHDSNG YLPAWMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-241021981101Developmental protein SEPALLATA 3
4ox0_B4e-241021981101Developmental protein SEPALLATA 3
4ox0_C4e-241021981101Developmental protein SEPALLATA 3
4ox0_D4e-241021981101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923638.10.0MADS-box protein EJ2
SwissprotQ8LLR21e-108MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLQ5K6A20.0Q5K6A2_ELAGV; MADS box transcription factor
STRINGXP_008786031.11e-141(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-83MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]