PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923453.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family RAV
Protein Properties Length: 367aa    MW: 40112.3 Da    PI: 10.0378
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923453.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.71.2e-1252100155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s++kGV   + +grW A+I++      ++r++lg+f  + eAa+a++ a+++++g
  XP_010923453.1  52 SHFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEESEAARAYDVAAQRFRG 100
                     789***9788.8*********3.....5**********88*************98 PP
2B3102.81.9e-32191291196
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+ltpsdv+k++rlv+pk++ae+h      g   +++ l +ed+ g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v+F+++  +++
  XP_010923453.1 191 FDKALTPSDVGKLNRLVIPKQHAEKHfpiqiAGAAGKGVLLNFEDSCGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDVVTFQRSTGQDK 285
                     89****************************97777899**************************************************8766777 PP

                     ..EEEE CS
              B3  91 elvvkv 96 
                     +l++ +
  XP_010923453.1 286 QLFIDW 291
                     777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.96E-2452107No hitNo description
SuperFamilySSF541711.05E-1652108IPR016177DNA-binding domain
PfamPF008474.8E-852100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-2053108IPR001471AP2/ERF domain
SMARTSM003804.9E-2853114IPR001471AP2/ERF domain
PROSITE profilePS5103219.61253108IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.4E-42186295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-31188292IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-28189280No hitNo description
PfamPF023621.3E-29191292IPR003340B3 DNA binding domain
SMARTSM010192.1E-23191295IPR003340B3 DNA binding domain
PROSITE profilePS5086314.113191294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDSRCIEDVC SIRTEKRPPP GPESLQRVGS GASVVLDPEV GVEAESRKLP SSHFKGVVPQ  60
PNGRWGAQIY EKHQRVWLGT FNEESEAARA YDVAAQRFRG RDAVTNFKPF SETDDDDAAE  120
LSFLASHSKA EIVDMLRKHT YHDEVRQSKR AFGAGKGSDR RSMPAGGYGG GLGLRFLAGS  180
GGGGAQREHL FDKALTPSDV GKLNRLVIPK QHAEKHFPIQ IAGAAGKGVL LNFEDSCGKV  240
WRFRYSYWNS SQSYVLTKGW SRFVKEKSLK AGDVVTFQRS TGQDKQLFID WKPRAAGGCA  300
EARPVQGIRL FGVNLFKIPA VAVGGAGLDG NGGVDHVVGC SRKGIRGMDH QLMPSPQQFK  360
KQKTEAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5618830711130DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923453.10.0AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9C6M51e-131RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A2H3Y0840.0A0A2H3Y084_PHODC; AP2/ERF and B3 domain-containing transcription factor RAV1
STRINGXP_008791228.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-130related to ABI3/VP1 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]