PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923284.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 310aa    MW: 33393.5 Da    PI: 6.1776
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923284.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.31.4e-15202238135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  XP_010923284.1 202 CQNCGISEkmTPAMRRGPAGPRSLCNACGLMWANKGT 238
                     **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.3E-96196IPR010399Tify domain
PROSITE profilePS5132015.0316196IPR010399Tify domain
PfamPF062002.6E-136395IPR010399Tify domain
PfamPF062035.8E-15130171IPR010402CCT domain
PROSITE profilePS5101713.096130172IPR010402CCT domain
SMARTSM004013.3E-10196256IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.99E-11199252No hitNo description
CDDcd002021.36E-14201248No hitNo description
Gene3DG3DSA:3.30.50.104.8E-14201240IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440202229IPR000679Zinc finger, GATA-type
PfamPF003202.1E-13202238IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSDANPPESH MYDHDGAAGD GVAGDGGLEG GSGIEKMDAA AAQASDQDHL ADAVDAAMPL  60
INATSNQLTL LFQGEVYVFD SVTPEKVQAV LLLLGGCEVP TGIAGMALPC HQDDRGYDDI  120
LRRTNIPAKR IASLIRFREK RKERNFDKKI RYNVRKEVAL RMQRRKGQFA GKANPQEGVS  180
ASSSVNPARN STQDEPPRES KCQNCGISEK MTPAMRRGPA GPRSLCNACG LMWANKGTLR  240
SPSKVKMSTQ SPTNPIEHGE AIDSELRGDN KALVHTSNNH DLVVTTAEIV AEGIPAGGRQ  300
EMEEDCKTEL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923284.10.0GATA transcription factor 18
SwissprotA2XKR71e-99GAT18_ORYSI; GATA transcription factor 18
TrEMBLA0A2H3YC650.0A0A2H3YC65_PHODC; GATA transcription factor 18-like
STRINGXP_008796631.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-68ZIM-like 1