PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010923251.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 791aa MW: 87129.8 Da PI: 5.5991 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.6 | 1.2e-07 | 55 | 97 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I +++ + q++++++ + XP_010923251.1 55 AWTRQEEENFFNALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 97 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.26E-10 | 47 | 102 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.4E-5 | 50 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.694 | 51 | 102 | IPR017884 | SANT domain |
SMART | SM00717 | 5.1E-5 | 52 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-5 | 55 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.94E-5 | 55 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 791 aa Download sequence Send to blast |
MKISTPMGSQ VDMELRTPLA EHVLMKEADF AFPSSSPMTV ATQKPAKKPT RQWAAWTRQE 60 EENFFNALRQ VGKNFEKITC RVQSKNKDQV RHYYYRLVRR MNKLLGPGFY LDAKNSKDTN 120 AAMLRWWSLL EKYSCTASKL HLKPRRFKIF VEALENQLLK DRNKTKRRRP HGDIYSSTPS 180 TQVVSRAPGN DARSLKLLTV DAQTTNKVGA TKGASFKRNV NANMNFSKGD SSMKTAKQKR 240 RTGVVASAEY RSWEEAAMAG VSLVADAAEQ LERAANERNG FSDGGTCNML PKEMYNSNNE 300 ICSHQIKETI MQPHVKLKLQ LFPIDEGTRK ALEKDAHNPH LELTLSARKK ISSVLDHLNR 360 KWGNSSIASG ELMLFPYNVQ LVELASCRRW TIKDTAASAA DVYATIGSPA VFRLRYGWFS 420 SAELRSGTFH VPSPDIQSEN CMLSKGILNG NNIMNGPDAK CINADAPPIT EFVGQPQQLS 480 EDQQTSVIAL ATSNIDPPEP MNEVNCVEPM DELPENSGRS PFSTSGEETK DLSGGPQQED 540 EVNAGMKCVI LSAGEWADSL TNISVGDLLS EASKAAKDGC LNSPAGASVS CLQQIQFSCD 600 SFDAAIAAHI SGHQLLPPTM QASHASIWNA EETCDEFSFP AMQQDGSKPS TNSSVEACRE 660 ITYPSSLGFQ DYLKELAESR PADDPSQECL TAEPESDKDL SFDDRDNPQK DPCLQDIYWP 720 DSLGPLDLDI PSPRYHGQDL GFGDSLSGLS RLIASSLDAF QNCSFFSLEK ESSATGACGA 780 SFLLDDKVPG E |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923251.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
Refseq | XP_019705927.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
Refseq | XP_019705942.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
Refseq | XP_019705958.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
Refseq | XP_019705966.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
Refseq | XP_019705975.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
Refseq | XP_019705993.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
Refseq | XP_029121969.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A2H3Y063 | 0.0 | A0A2H3Y063_PHODC; TSL-kinase interacting protein 1 isoform X2 | ||||
STRING | XP_008791198.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5478 | 36 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36960.2 | 0.0 | TSL-kinase interacting protein 1 |