PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010923245.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 456aa MW: 49862.9 Da PI: 6.839 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.6e-17 | 116 | 162 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd lv +vkq+G ++W+ Ia+++ gR++kqc++rw+++l XP_010923245.1 116 KGQWTVEEDGMLVGLVKQHGVRQWSQIAKKLV-GRSGKQCRERWHNHL 162 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 59.6 | 6.7e-19 | 168 | 210 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+eE+ llv+a+k+ G++ W+ Ia++++ gR+++++k++w+ XP_010923245.1 168 KDTWTEEEERLLVEAHKKVGNR-WAEIAKHIP-GRSENSIKNHWN 210 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.524 | 111 | 162 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.95E-31 | 115 | 209 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-15 | 115 | 164 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-27 | 117 | 169 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.0E-18 | 119 | 179 | No hit | No description |
CDD | cd00167 | 9.62E-15 | 119 | 162 | No hit | No description |
PROSITE profile | PS51294 | 28.616 | 163 | 217 | IPR017930 | Myb domain |
SMART | SM00717 | 8.3E-18 | 167 | 215 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-21 | 170 | 215 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.08E-15 | 170 | 210 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MDFNMETVSA GRIDGLVEKS ARSFRPAPPL TPLQRFLASS CHGELRLVKS PIGKLEQKAE 60 IPPGAIGVPP DGMLLNDFSF YDDAKNAIIR SKNCGEGNGV KGSSSTTVAA ASAVVKGQWT 120 VEEDGMLVGL VKQHGVRQWS QIAKKLVGRS GKQCRERWHN HLRPDIKKDT WTEEEERLLV 180 EAHKKVGNRW AEIAKHIPGR SENSIKNHWN ATRRRQSAKR RSKRKTAVQG GRSRPSILHE 240 YVRSKMLELR DNCTTKFAPS AAPPSPPHQH HITFPNVQEP SSALDSSIST ATQMEDPTAS 300 FMEAFFLDRS ATGSAEEGEF HVGDVQEPCK LDPLDVLDLD DGDYLMGGVD ECISLAPPPA 360 LDMFHSEANG LSTAVSDGTI ITKSAAPLFS DNYISYLLNG APSSSADVFG SANTEILEDQ 420 TSSSCKRELD LIEMLSLQSS RSRSLTQTSS SSNTSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-45 | 114 | 216 | 5 | 107 | B-MYB |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00567 | DAP | Transfer from AT5G58850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923245.1 | 0.0 | transcription factor MYB119-like | ||||
STRING | XP_008785587.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 2e-51 | myb domain protein 119 |