PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923173.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 379aa    MW: 40243.8 Da    PI: 6.3172
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923173.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.66.9e-1981126147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd ll ++vk++G ++W++Iar ++ gR++k+c++rw + 
   XP_010923173.1  81 KGPWSPEEDALLSNLVKKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 126
                      79******************************.***********985 PP
2Myb_DNA-binding56.28e-18133177147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd +++ a++ +G++ W++Iar +  gRt++ +k++w++ 
   XP_010923173.1 133 RKPFTEEEDRIIIAAHAIHGNK-WASIARLLE-GRTDNAIKNHWNST 177
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.4976127IPR017930Myb domain
SuperFamilySSF466894.31E-3179174IPR009057Homeodomain-like
SMARTSM007172.1E-1680129IPR001005SANT/Myb domain
PfamPF002496.3E-1881126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2782134IPR009057Homeodomain-like
CDDcd001671.12E-1583125No hitNo description
PROSITE profilePS5129426.323128182IPR017930Myb domain
SMARTSM007174.8E-17132180IPR001005SANT/Myb domain
PfamPF002493.3E-15133177IPR001005SANT/Myb domain
CDDcd001677.01E-13135178No hitNo description
Gene3DG3DSA:1.10.10.605.6E-23135181IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
METEPEMAAE SASPPPPPPP RPSPPPSSSP PAPSAAVEES ASNSSAAEGG EKDPGETAAA  60
GGSASGGGRG AGAALVDDRV KGPWSPEEDA LLSNLVKKFG ARNWSLIARG IPGRSGKSCR  120
LRWCNQLDPY VKRKPFTEEE DRIIIAAHAI HGNKWASIAR LLEGRTDNAI KNHWNSTLRR  180
RRFLAEQYKA AACDTVQDAS AEKAKESSEG SPSIGDVNSF KSLEGRDINS RENISDNSEN  240
IVHVRDGPSE VKDPPYLFRP VARISAFRPY NHASGPSSGS LLSGPVQMHG VIPQVFQAGG  300
GVCKLLDGNC SEPQVPPQCG HGCCSVQNDR HPRNSLLGPE FVEFVELPPI SSQELFSAAS  360
DLSSIAWLKS GLQISSSCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-42761812107B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923173.10.0transcription factor MYB1
SwissprotQ425755e-82MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A2H3XLM90.0A0A2H3XLM9_PHODC; transcription factor MYB1-like
STRINGXP_008785463.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.13e-85myb domain protein 109
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]