PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923123.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 301aa    MW: 33710.6 Da    PI: 8.968
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923123.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.2e-113077247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g+WT+eE +++ da +q+  +   +W+++a+ ++ g++  +++ +++++
   XP_010923123.1 30 GNWTQEENKRFEDALAQFDRDtpdRWERVAAVIP-GKSVRDIITHYRDL 77
                     89*****************99*************.***********986 PP
2Myb_DNA-binding44.34.1e-14136180347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + +++G+g+W+ I+r +  +Rt+ q+ s+ qky
   XP_010923123.1 136 PWTEEEHKLFLLGLQKYGKGDWRNISRNFVITRTPTQVASHAQKY 180
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.372782IPR017884SANT domain
Gene3DG3DSA:1.10.10.601.1E-42876IPR009057Homeodomain-like
SMARTSM007171.1E-92880IPR001005SANT/Myb domain
PfamPF002491.2E-83077IPR001005SANT/Myb domain
SuperFamilySSF466891.1E-113084IPR009057Homeodomain-like
CDDcd001675.45E-83177No hitNo description
PROSITE profilePS5129418.32129185IPR017930Myb domain
SuperFamilySSF466892.35E-17131185IPR009057Homeodomain-like
TIGRFAMsTIGR015577.9E-18132183IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.3E-12133179IPR009057Homeodomain-like
SMARTSM007179.9E-13133183IPR001005SANT/Myb domain
PfamPF002499.3E-13136180IPR001005SANT/Myb domain
CDDcd001673.60E-11136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MVTNSWMQVL TPRAPYFPNS SWLPGPKRSG NWTQEENKRF EDALAQFDRD TPDRWERVAA  60
VIPGKSVRDI ITHYRDLEDD VNDIEAGRIP CPGYTSSSFT LDWENSHGYE GFKPSYCIAG  120
KRSGGRPDQE RKKGVPWTEE EHKLFLLGLQ KYGKGDWRNI SRNFVITRTP TQVASHAQKY  180
FIRLNSGGKD KRRSSIHDIT TVNLPNNGPP SPPQASVLAK RSSSAAATGI SDQFSVIVDP  240
NQPNEAAGVF SPSAHGNPFM HPPYEITTYG MKLPAPNSQR GSLQDSMVGD HHMMFQMQPH  300
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1432971176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923123.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-106DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2H3XL350.0A0A2H3XL35_PHODC; transcription factor DIVARICATA isoform X1
STRINGXP_008785419.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-90MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]