PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010923106.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | WOX | ||||||||
Protein Properties | Length: 178aa MW: 20370.9 Da PI: 9.6085 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 5.1e-20 | 15 | 76 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L +lF++ r+ps+++++ ++++l +++ ++V++WFqN++a+e++ XP_010923106.1 15 KCGRWNPTAEQVKVLTDLFRSgLRTPSTDQIQTISSHLssfgKIESKNVFYWFQNHKARERH 76 568*****************99**************************************95 PP | |||||||
2 | Wus_type_Homeobox | 110.7 | 8.1e-36 | 15 | 77 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++ RW+Pt+eQ+k+L++l++sGlrtP++++iq i+++L+++Gkie+kNVfyWFQN+kaRer++ XP_010923106.1 15 KCGRWNPTAEQVKVLTDLFRSGLRTPSTDQIQTISSHLSSFGKIESKNVFYWFQNHKARERHH 77 578**********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.009 | 12 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.0E-4 | 14 | 81 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.18E-11 | 15 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.1E-17 | 16 | 76 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-7 | 18 | 75 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010078 | Biological Process | maintenance of root meristem identity | ||||
GO:1902459 | Biological Process | positive regulation of stem cell population maintenance | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDEGDRFGTA RVGAKCGRWN PTAEQVKVLT DLFRSGLRTP STDQIQTISS HLSSFGKIES 60 KNVFYWFQNH KARERHHKKR RRGGPGPGAG GGEDHLLLLP DKRGARTRSL PSNDDSRKSE 120 QEVMWEERQR EIETLELFPL KSYDLAAEKW RSMRNECKEA GFLEAGMDPP LDLSLRFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269|PubMed:12904206}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923106.1 | 1e-130 | WUSCHEL-related homeobox 9 | ||||
Swissprot | Q8W0F1 | 3e-63 | WOX9_ORYSJ; WUSCHEL-related homeobox 9 | ||||
TrEMBL | A0A2H3XLH4 | 2e-93 | A0A2H3XLH4_PHODC; WUSCHEL-related homeobox 9-like | ||||
STRING | XP_008785588.1 | 4e-94 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9411 | 36 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11260.1 | 3e-37 | WUSCHEL related homeobox 5 |
Publications ? help Back to Top | |||
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