PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922881.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 379aa    MW: 41711.5 Da    PI: 6.6433
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922881.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-17101146147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+q+G+++W++Ia+++  gR++k+c++rw++ 
   XP_010922881.1 101 RGHWRPSEDARLRELVAQYGPHNWNLIAEKLD-GRSGKSCRLRWFNQ 146
                      899*****************************.***********996 PP
2Myb_DNA-binding56.85e-18154197247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+  
   XP_010922881.1 154 TSFTEEEEERLLAAHRFHGNK-WALIARFFP-GRTDNAVKNHWHVM 197
                      689******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5296147IPR017930Myb domain
SuperFamilySSF466892.11E-28100194IPR009057Homeodomain-like
SMARTSM007173.4E-14100149IPR001005SANT/Myb domain
PfamPF002493.0E-16101146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-26102154IPR009057Homeodomain-like
CDDcd001671.23E-13104145No hitNo description
PROSITE profilePS5129426.583148202IPR017930Myb domain
SMARTSM007174.8E-16152200IPR001005SANT/Myb domain
PfamPF002494.9E-15154196IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-21155200IPR009057Homeodomain-like
CDDcd001678.28E-8164198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGSLNPKSAL EMGFFPPPPP LPPSSSPPFL GASSSCSAER ECWPCDMGYP SEEKQDEGFQ  60
GFEGGQGYPG GEKSDGDEGD EGENAGGKRD SEGGQAKLCI RGHWRPSEDA RLRELVAQYG  120
PHNWNLIAEK LDGRSGKSCR LRWFNQLDPR INKTSFTEEE EERLLAAHRF HGNKWALIAR  180
FFPGRTDNAV KNHWHVMMAR RQREMCNGYR RRKLSSLTPT SPCVPILPRM MELVGTGNNN  240
AHSGESTITT NRDESASSST GLSPNSPNNL VIPGFVNRFG PSELPHHFQF LMGSHEKLVA  300
ARNVCNEKFG TSDRCFYQSA PVLMAMGVDQ AGHSEATSEA STTESVANPK NNAIMHAERD  360
NDGKKMTFTF IDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-34982011104C-Myb DNA-Binding Domain
1msf_C3e-34982011104C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922881.10.0transcription factor CSA
TrEMBLA0A2H3Y2W20.0A0A2H3Y2W2_PHODC; transcription factor CSA-like
STRINGXP_008792516.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.15e-61myb domain protein 117