PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010922692.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 240aa MW: 26762.8 Da PI: 9.2087 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 64.9 | 1.9e-20 | 41 | 87 | 1 | 47 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+Ca++C+++pyfp ++p+kfa vhk+FGasnv+k+l XP_010922692.1 41 PCAACKLLRRRCAQECPFSPYFPPHEPQKFASVHKVFGASNVSKMLL 87 7********************************************85 PP | |||||||
2 | DUF260 | 55.3 | 1.9e-17 | 123 | 178 | 45 | 100 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 + +++pe +r da++slvyeA++r+rdPvyG++g +++lqqq++ l++el+++++e XP_010922692.1 123 YNQEVPEAQRADAANSLVYEANMRLRDPVYGCMGAVSDLQQQVQALEVELQVVRAE 178 56899**********************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.863 | 40 | 179 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-19 | 41 | 86 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-15 | 125 | 176 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSTERERFDE VGKKIKRETD VTTDRMGRRL GPVGTLNTIT PCAACKLLRR RCAQECPFSP 60 YFPPHEPQKF ASVHKVFGAS NVSKMLLVYY FHPPQNLPSF IIIFSILNHI RWSSRDAHIF 120 FTYNQEVPEA QRADAANSLV YEANMRLRDP VYGCMGAVSD LQQQVQALEV ELQVVRAEIL 180 KHKSRQASVR VLPTSHAALL AHSVDVPVAA PPPIPTPPPR PASSASSSSI YTTPPFDLLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-35 | 40 | 182 | 10 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-35 | 40 | 182 | 10 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922693.1 | 1e-119 | LOB domain-containing protein 15 isoform X1 | ||||
Swissprot | Q8L5T5 | 7e-68 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A2H3ZAG5 | 1e-103 | A0A2H3ZAG5_PHODC; LOB domain-containing protein 15-like | ||||
STRING | XP_008810564.1 | 1e-104 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 4e-67 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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