PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010922519.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 22000 Da PI: 5.6269 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.2 | 5.2e-42 | 40 | 138 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++C++apyfp ++p kfa h++FGasn++kll++lpe++r da+ss++yeA+ar+rdPvyG++g+i +lq+q+++l+a+la XP_010922519.1 40 PCAACKILRRRCSEKCMFAPYFPPNEPLKFATSHRVFGASNIIKLLQELPESQRADAVSSMAYEANARIRDPVYGCAGIICQLQKQVSELQAQLA 134 7*********************************************************************************************9 PP DUF260 96 llke 99 + ++ XP_010922519.1 135 REQA 138 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.134 | 39 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-42 | 40 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MEASEATTTT TTFHCPPSSS PSSSPASSPH VASPPVVLSP CAACKILRRR CSEKCMFAPY 60 FPPNEPLKFA TSHRVFGASN IIKLLQELPE SQRADAVSSM AYEANARIRD PVYGCAGIIC 120 QLQKQVSELQ AQLAREQADL LTMKTQHANL VAVIYMEMAQ SPQLVRDNFN TNNLNLLQTD 180 AFMQDDYCQG SIWEEPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-43 | 35 | 141 | 6 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-43 | 35 | 141 | 6 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922519.1 | 1e-148 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 1e-66 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2H3XHB0 | 2e-99 | A0A2H3XHB0_PHODC; LOB domain-containing protein 1-like | ||||
STRING | XP_008783779.1 | 1e-100 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-61 | LOB domain-containing protein 1 |