PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010922397.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 187aa MW: 21560.9 Da PI: 4.7258 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l+++++ ++G++ W++Iar+++ gRt++++k++w++++ XP_010922397.1 2 TPQEERLILELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43 9*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.14E-11 | 1 | 43 | No hit | No description |
PROSITE profile | PS51294 | 24.852 | 1 | 47 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.36E-13 | 2 | 49 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.4E-15 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MTPQEERLIL ELHSRWGNRW SRIARKLPGR TDNEIKNYWR THMRKKAQER KKNALSSSSS 60 SSSLTDNSAS VSEPPSDAGL EQHELNGGSG CCCMAAGFVE NEEGVKGYSM DQIWNEIIAT 120 PEAVSELSFG EWKNDFFDTS WPPMPSPMWE YSSESPWKMD YEEFKMLPSL DDLLLFSNYQ 180 HGREFYN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922397.1 | 1e-138 | myb-related protein MYBAS2 isoform X2 | ||||
Swissprot | Q4JL76 | 7e-42 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | A0A2H3XSU6 | 3e-87 | A0A2H3XSU6_PHODC; myb-related protein MYBAS2 isoform X1 | ||||
TrEMBL | A0A3Q0I2V1 | 3e-88 | A0A3Q0I2V1_PHODC; myb-related protein MYBAS2 isoform X2 | ||||
STRING | XP_008788078.1 | 5e-88 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.1 | 1e-37 | myb domain protein 59 |
Publications ? help Back to Top | |||
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