PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010922390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 18431.1 Da PI: 8.4019 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0014 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H XP_010922390.1 45 FECKTCNRQFPSFQALGGHRASH 67 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.69E-8 | 43 | 110 | No hit | No description |
Pfam | PF13912 | 2.7E-13 | 44 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.827 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.2E-10 | 87 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.349 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MKRFRFGGEE EVESMNMANV LMLLSRGGGG EESEHTAQAS PSRVFECKTC NRQFPSFQAL 60 GGHRASHKKP RLTAEGQLQG GLAKPRVHEC SICGLEFAIG QALGGHMRRH RAATEGFGHG 120 LAEKKPEGRR VLSLDLNLPP SENDIECRGK IGFGMEIVDK IRMVDCLN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922390.1 | 1e-120 | zinc finger protein ZAT11 | ||||
TrEMBL | A0A2H3XSD7 | 6e-98 | A0A2H3XSD7_PHODC; zinc finger protein ZAT11 | ||||
STRING | XP_008788081.1 | 1e-98 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 8e-40 | C2H2 family protein |