PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922327.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 590aa    MW: 64061.1 Da    PI: 8.8632
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922327.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-1762108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ede l +av+ + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
   XP_010922327.1  62 KGGWTPQEDETLRKAVEAYKGRCWKKIAEFFP-DRTEVQCLHRWQKVL 108
                      688*****************************.************986 PP

2Myb_DNA-binding61.61.7e-19114160148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde+++ +v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
   XP_010922327.1 114 KGPWTPEEDEQIITLVQKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 160
                      79******************************.*************97 PP

3Myb_DNA-binding57.43.3e-18166209146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT+eE++ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++
   XP_010922327.1 166 KDAWTAEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNSIKNHWNS 209
                      679*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.77257108IPR017930Myb domain
SuperFamilySSF466893.3E-1558115IPR009057Homeodomain-like
SMARTSM007171.5E-1561110IPR001005SANT/Myb domain
PfamPF002491.1E-1562108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2264120IPR009057Homeodomain-like
CDDcd001676.97E-1465108No hitNo description
PROSITE profilePS5129430.504109164IPR017930Myb domain
SuperFamilySSF466893.56E-32111207IPR009057Homeodomain-like
SMARTSM007177.3E-19113162IPR001005SANT/Myb domain
PfamPF002497.5E-19114160IPR001005SANT/Myb domain
CDDcd001676.00E-17116160No hitNo description
Gene3DG3DSA:1.10.10.601.2E-27121167IPR009057Homeodomain-like
PROSITE profilePS5129423.328165215IPR017930Myb domain
SMARTSM007173.4E-17165213IPR001005SANT/Myb domain
PfamPF002492.4E-16166209IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-23168215IPR009057Homeodomain-like
CDDcd001671.60E-13168211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MEVMAAVKIE QSCVENKQSA AASSSSLSEG SYGFSRMSPA VSSLATSSPS HRRTSGPIRR  60
AKGGWTPQED ETLRKAVEAY KGRCWKKIAE FFPDRTEVQC LHRWQKVLNP ELIKGPWTPE  120
EDEQIITLVQ KYGPTKWSVI AKSLPGRIGK QCRERWHNHL NPMIKKDAWT AEEELALMNA  180
HRIHGNKWAE IAKVLPGRTD NSIKNHWNSS LKKKLDFYLA TGKLPPVPNP AVHGGSKDIV  240
NQASGQLFLS SNKRSDTSTE ALSETAGSTH SCLPSESSKL EEHRESLESI TIQISRSEAF  300
TGVQIIGLNT SAAECQAPTL QVDNLCNGSD PGVRLGSYSN TGEIDKDDKI PGIALHSELS  360
STFGSLCYKP PQLEDLGLSV ASALLSTYDP AQQSYSSGTV TSPIGYSTPP FVSGKNSGQH  420
SAESILKSAA RSFPNTPSIL RRRKREGGTP LPPDITVQTD RIKIQDSSCT PIEGKSRSDP  480
EPLKSSKSPC GDGGVVPHNI KTFNVSPPYR LRSKRTAIIK SVEKQLDFTS REDNIDGKAK  540
SLGLAINGSS HSADCNGNLP IMQGRKLSEC PVGLESLAND LAHTTKLGVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-72612155159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-72612155159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922328.10.0transcription factor MYB3R-3
SwissprotQ0JHU71e-154MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A2H3YRH40.0A0A2H3YRH4_PHODC; transcription factor MYB3R-3
STRINGXP_008802730.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-142myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]