PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010922327.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 590aa MW: 64061.1 Da PI: 8.8632 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.8e-17 | 62 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+ ++ Rt+ qc +rwqk+l XP_010922327.1 62 KGGWTPQEDETLRKAVEAYKGRCWKKIAEFFP-DRTEVQCLHRWQKVL 108 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 61.6 | 1.7e-19 | 114 | 160 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+++ +v+++G+ W+ Ia+ ++ gR +kqc++rw+++l XP_010922327.1 114 KGPWTPEEDEQIITLVQKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 160 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 57.4 | 3.3e-18 | 166 | 209 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT+eE++ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++ XP_010922327.1 166 KDAWTAEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNSIKNHWNS 209 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.772 | 57 | 108 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.3E-15 | 58 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 61 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 62 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-22 | 64 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.97E-14 | 65 | 108 | No hit | No description |
PROSITE profile | PS51294 | 30.504 | 109 | 164 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-32 | 111 | 207 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-19 | 113 | 162 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-19 | 114 | 160 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.00E-17 | 116 | 160 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 121 | 167 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.328 | 165 | 215 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-17 | 165 | 213 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-16 | 166 | 209 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 168 | 215 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.60E-13 | 168 | 211 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MEVMAAVKIE QSCVENKQSA AASSSSLSEG SYGFSRMSPA VSSLATSSPS HRRTSGPIRR 60 AKGGWTPQED ETLRKAVEAY KGRCWKKIAE FFPDRTEVQC LHRWQKVLNP ELIKGPWTPE 120 EDEQIITLVQ KYGPTKWSVI AKSLPGRIGK QCRERWHNHL NPMIKKDAWT AEEELALMNA 180 HRIHGNKWAE IAKVLPGRTD NSIKNHWNSS LKKKLDFYLA TGKLPPVPNP AVHGGSKDIV 240 NQASGQLFLS SNKRSDTSTE ALSETAGSTH SCLPSESSKL EEHRESLESI TIQISRSEAF 300 TGVQIIGLNT SAAECQAPTL QVDNLCNGSD PGVRLGSYSN TGEIDKDDKI PGIALHSELS 360 STFGSLCYKP PQLEDLGLSV ASALLSTYDP AQQSYSSGTV TSPIGYSTPP FVSGKNSGQH 420 SAESILKSAA RSFPNTPSIL RRRKREGGTP LPPDITVQTD RIKIQDSSCT PIEGKSRSDP 480 EPLKSSKSPC GDGGVVPHNI KTFNVSPPYR LRSKRTAIIK SVEKQLDFTS REDNIDGKAK 540 SLGLAINGSS HSADCNGNLP IMQGRKLSEC PVGLESLAND LAHTTKLGVT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 4e-72 | 61 | 215 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-72 | 61 | 215 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922328.1 | 0.0 | transcription factor MYB3R-3 | ||||
Swissprot | Q0JHU7 | 1e-154 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A2H3YRH4 | 0.0 | A0A2H3YRH4_PHODC; transcription factor MYB3R-3 | ||||
STRING | XP_008802730.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-142 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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