PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922302.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 681aa    MW: 75302.3 Da    PI: 8.7657
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922302.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07581630147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_010922302.1 581 RRPFSVSEVEALVEAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 630
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.49E-5381468IPR029071Ubiquitin-related domain
CDDcd017690.00311390456No hitNo description
PROSITE profilePS5129415.311576635IPR017930Myb domain
SMARTSM007171.2E-7580633IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-10581631IPR009057Homeodomain-like
CDDcd116602.02E-17582632No hitNo description
SuperFamilySSF466891.26E-15582663IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MVFKKRLEYS FNGYQVPAMP QIPKSAKGKR SVRRKVVDGQ MCAFDLLAAV AGKILERENS  60
STLSSIVGNS NQNVKQEQLD EEKPCKDEAF DQVSCKESTS GSELPIQRQI LHTLKEHSQI  120
PNATASESTF VAVKSDVFNK DIYTGDFVAN GSKEELAYSL GTTAKKCCTD SYSPCSAESC  180
QAEFMEGINK PIVSDQHEAA TSMVKNIQHS WSLDNPVEQD AKLPALASLD SSVKVPLNGH  240
LIPHISSFLI CRDDTELLVD RDDDENSSGC THPSTITSKA LKPQYHKIRK LFSKTDVETK  300
PAFHSLKFCY TRRRTQRYSF KRRKVYEHRL MSPSDGGISS KGFCNSSEKE INYKTNNSHS  360
ALHGENGTSS SASGQISSYK SENFHVKLSI KSFNVPELFI EISETATVGS LKRTVMEAVT  420
AFLGGGLHVG VLLQGKKVRD DNKTLLQAGI SHVDKLDNLG FMLEPKSTGA SSPVTTTEYL  480
HTLRPCDATE PLARHPAASP APVPEIFNAS PEPPVTSAVN FPESDHDSVH SPIDTKLVNK  540
ATATTSNSRA LVPVPAMSVD ALSMVPLHKP RRSELAQRRI RRPFSVSEVE ALVEAVEKLG  600
TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPRQ RRGEPVPQEL LDRVLAAHAY  660
WSQQQARFQV KTPLAEACVL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-555696745109Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922302.10.0telomere repeat-binding protein 2
RefseqXP_029120688.10.0telomere repeat-binding protein 2
RefseqXP_029120689.10.0telomere repeat-binding protein 2
TrEMBLA0A2H3XLJ20.0A0A2H3XLJ2_PHODC; LOW QUALITY PROTEIN: telomere repeat-binding protein 4
STRINGXP_008785577.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5245714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-88TRF-like 2