PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010922300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GRAS | ||||||||
Protein Properties | Length: 754aa MW: 85082.4 Da PI: 5.6597 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 387.6 | 1.4e-118 | 378 | 749 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++ L++cA+av+ +d ++a++lL+++++++sp+gd++qRla+yf+ +L+arla+++se+y++l ++++ +++ l+a++l+ ++P+ k+sh XP_010922300.1 378 LRTILIHCAQAVAIDDRRNANELLKQIRQHSSPYGDATQRLAHYFADGLQARLAGTGSEIYNSLVAKRSC---TADILKAHHLYMSACPFKKISH 469 5789************************************************************999998...89******************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + q+Il+ +e+++rvHi+D++i++G+QWp++lq L++Rp+gpp+lRiTg+++p++g +e++eetg+rLa++++++++pfe+++ +a ++e+ XP_010922300.1 470 FFSSQTILNVAEKATRVHIVDYGIGYGFQWPCFLQRLSTRPGGPPRLRITGIDEPQPGfrPTERIEETGRRLADYCRSFDIPFEYHA-IAAKWET 563 ***************************************************************************************.799**** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+++++++E+l+V++ ++ +l+de+v l+s+r+ vL+++++++P+v++ v + +++++ F++rf eal ++salfd+le+++pre+ +r+ XP_010922300.1 564 IRVEDINIDKDEVLIVSCLFRFRHLMDETVVLDSPRNMVLNTIRKMNPEVFINVIMNGSYSAPFFVTRFREALFHFSALFDMLETNVPREDAQRQ 658 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er l+gre+ nv+aceg er+er et+++W+ r +aGF+++pl+ +++k+ + ++ + + + v+e+ ++l++gWk+r ++++S+W+ XP_010922300.1 659 LIERDLFGREVLNVIACEGLERVERPETYKQWQVRTLRAGFTQLPLDPDIVKKSRDKVNAGYHKDFIVDEDGKWLLQGWKGRIIYALSSWK 749 ***********************************************************999888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 70.206 | 352 | 729 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.9E-116 | 378 | 749 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 754 aa Download sequence Send to blast |
MVMGTGIRDL RGTTSGLTYE HPFHDQTSIN NLKSVGPPPP MLENERFIDL QNVPQTSTLS 60 GPTSSILTTS ANASSSVTAS TELDPAEDAE LFSDIVLSYI SQMLMEEDVD EKFEHPALLA 120 AEKPFYDILA ENSSLSPDQP PLSSNHSSGS PDDSSNNHYG SSSGYVSKNL VVDNNSWPYD 180 SLEYQQLQTH PAPVDYFSQS SFSSSNIVEG LDETLANTVA VPDLFSESQP AWEQFRRGVE 240 EARKFLPSED KLVIDLEANG FSLPREEVKQ ENKLVEVKAE KEERQGSRGR KNPHGDDWEL 300 EEGRSNKQSA VFPDQTVRTD MFDRILLYTG EACLKGPSEL RAAMEKEASR RSQSNQSKGS 360 GGGKGRGKRQ PKREVVDLRT ILIHCAQAVA IDDRRNANEL LKQIRQHSSP YGDATQRLAH 420 YFADGLQARL AGTGSEIYNS LVAKRSCTAD ILKAHHLYMS ACPFKKISHF FSSQTILNVA 480 EKATRVHIVD YGIGYGFQWP CFLQRLSTRP GGPPRLRITG IDEPQPGFRP TERIEETGRR 540 LADYCRSFDI PFEYHAIAAK WETIRVEDIN IDKDEVLIVS CLFRFRHLMD ETVVLDSPRN 600 MVLNTIRKMN PEVFINVIMN GSYSAPFFVT RFREALFHFS ALFDMLETNV PREDAQRQLI 660 ERDLFGREVL NVIACEGLER VERPETYKQW QVRTLRAGFT QLPLDPDIVK KSRDKVNAGY 720 HKDFIVDEDG KWLLQGWKGR IIYALSSWKP NHAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-52 | 384 | 750 | 25 | 380 | Protein SCARECROW |
5b3h_A | 9e-53 | 384 | 750 | 24 | 379 | Protein SCARECROW |
5b3h_D | 9e-53 | 384 | 750 | 24 | 379 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922300.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_010922301.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A2H3XLW7 | 0.0 | A0A2H3XLW7_PHODC; scarecrow-like protein 9 | ||||
STRING | XP_008785573.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |