PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 754aa    MW: 85082.4 Da    PI: 5.6597
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922300.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS387.61.4e-1183787491374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ L++cA+av+ +d ++a++lL+++++++sp+gd++qRla+yf+ +L+arla+++se+y++l ++++    +++ l+a++l+  ++P+ k+sh
  XP_010922300.1 378 LRTILIHCAQAVAIDDRRNANELLKQIRQHSSPYGDATQRLAHYFADGLQARLAGTGSEIYNSLVAKRSC---TADILKAHHLYMSACPFKKISH 469
                     5789************************************************************999998...89******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +   q+Il+ +e+++rvHi+D++i++G+QWp++lq L++Rp+gpp+lRiTg+++p++g   +e++eetg+rLa++++++++pfe+++ +a ++e+
  XP_010922300.1 470 FFSSQTILNVAEKATRVHIVDYGIGYGFQWPCFLQRLSTRPGGPPRLRITGIDEPQPGfrPTERIEETGRRLADYCRSFDIPFEYHA-IAAKWET 563
                     ***************************************************************************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+++++++E+l+V++ ++  +l+de+v l+s+r+ vL+++++++P+v++ v  + +++++ F++rf eal ++salfd+le+++pre+ +r+
  XP_010922300.1 564 IRVEDINIDKDEVLIVSCLFRFRHLMDETVVLDSPRNMVLNTIRKMNPEVFINVIMNGSYSAPFFVTRFREALFHFSALFDMLETNVPREDAQRQ 658
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +Er l+gre+ nv+aceg er+er et+++W+ r  +aGF+++pl+ +++k+ +  ++  + + + v+e+ ++l++gWk+r ++++S+W+
  XP_010922300.1 659 LIERDLFGREVLNVIACEGLERVERPETYKQWQVRTLRAGFTQLPLDPDIVKKSRDKVNAGYHKDFIVDEDGKWLLQGWKGRIIYALSSWK 749
                     ***********************************************************999888*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.206352729IPR005202Transcription factor GRAS
PfamPF035144.9E-116378749IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MVMGTGIRDL RGTTSGLTYE HPFHDQTSIN NLKSVGPPPP MLENERFIDL QNVPQTSTLS  60
GPTSSILTTS ANASSSVTAS TELDPAEDAE LFSDIVLSYI SQMLMEEDVD EKFEHPALLA  120
AEKPFYDILA ENSSLSPDQP PLSSNHSSGS PDDSSNNHYG SSSGYVSKNL VVDNNSWPYD  180
SLEYQQLQTH PAPVDYFSQS SFSSSNIVEG LDETLANTVA VPDLFSESQP AWEQFRRGVE  240
EARKFLPSED KLVIDLEANG FSLPREEVKQ ENKLVEVKAE KEERQGSRGR KNPHGDDWEL  300
EEGRSNKQSA VFPDQTVRTD MFDRILLYTG EACLKGPSEL RAAMEKEASR RSQSNQSKGS  360
GGGKGRGKRQ PKREVVDLRT ILIHCAQAVA IDDRRNANEL LKQIRQHSSP YGDATQRLAH  420
YFADGLQARL AGTGSEIYNS LVAKRSCTAD ILKAHHLYMS ACPFKKISHF FSSQTILNVA  480
EKATRVHIVD YGIGYGFQWP CFLQRLSTRP GGPPRLRITG IDEPQPGFRP TERIEETGRR  540
LADYCRSFDI PFEYHAIAAK WETIRVEDIN IDKDEVLIVS CLFRFRHLMD ETVVLDSPRN  600
MVLNTIRKMN PEVFINVIMN GSYSAPFFVT RFREALFHFS ALFDMLETNV PREDAQRQLI  660
ERDLFGREVL NVIACEGLER VERPETYKQW QVRTLRAGFT QLPLDPDIVK KSRDKVNAGY  720
HKDFIVDEDG KWLLQGWKGR IIYALSSWKP NHAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5238475025380Protein SCARECROW
5b3h_A9e-5338475024379Protein SCARECROW
5b3h_D9e-5338475024379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922300.10.0scarecrow-like protein 9
RefseqXP_010922301.10.0scarecrow-like protein 9
TrEMBLA0A2H3XLW70.0A0A2H3XLW7_PHODC; scarecrow-like protein 9
STRINGXP_008785573.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein