PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922255.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 359aa    MW: 40308.1 Da    PI: 6.7994
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922255.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.32.4e-3081383128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya...tgkrknratksgyWkatgkdkev 92 
                      G+ F Ptdee+++ +Lkkk+++++l+  + ike+d+y ++P +L ++++++++  +w+fF+ + +k++   +++r++r++ +g+Wk+t + k v
  XP_010922255.1   8 SGYVFYPTDEEILDTFLKKKLQHQPLPS-DRIKEADVYGTHPTNLTAQFEKSNRlsQWFFFTWTTRKHPdatNSTRASRVAGQGRWKSTQSVKLV 101
                     6999***********************9.88**************97666655567******99999985556778889999************* PP

             NAM  93 lskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                      + kg++vg k+ + + +  +a k ekt W+m+ey++
  XP_010922255.1 102 RDGKGQVVGSKQNFCYMEHtTAGKEEKTMWLMEEYSI 138
                     **9**************654888999*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.0896167IPR003441NAC domain
SuperFamilySSF1019413.53E-357167IPR003441NAC domain
PfamPF023651.8E-168138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVVSQPASGY VFYPTDEEIL DTFLKKKLQH QPLPSDRIKE ADVYGTHPTN LTAQFEKSNR  60
LSQWFFFTWT TRKHPDATNS TRASRVAGQG RWKSTQSVKL VRDGKGQVVG SKQNFCYMEH  120
TTAGKEEKTM WLMEEYSIQS LRTRGGVAVS KDQKKLDDWV VCKIYLRPKA RKEPSSMKVA  180
ARETRNLEWP KTGNQPFVTQ VQESLNCQLA DDTLPPLIDA SNQEMVSFQA PYGVLQHPAP  240
QNMDGNFGSL HHEQPANAPN EGLDYALQHD VASLHEIYHP FYHEQPASAP NEGLDYALQH  300
DVASLPGIRH PFYHEQPASA PNGGLDYALQ HDVSSFGSEE PNLTKFGKKL LAAEGGTNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-20916520163NO APICAL MERISTEM PROTEIN
1ut4_B6e-20916520163NO APICAL MERISTEM PROTEIN
1ut7_A6e-20916520163NO APICAL MERISTEM PROTEIN
1ut7_B6e-20916520163NO APICAL MERISTEM PROTEIN
3swm_A7e-20916523166NAC domain-containing protein 19
3swm_B7e-20916523166NAC domain-containing protein 19
3swm_C7e-20916523166NAC domain-containing protein 19
3swm_D7e-20916523166NAC domain-containing protein 19
3swp_A7e-20916523166NAC domain-containing protein 19
3swp_B7e-20916523166NAC domain-containing protein 19
3swp_C7e-20916523166NAC domain-containing protein 19
3swp_D7e-20916523166NAC domain-containing protein 19
4dul_A6e-20916520163NAC domain-containing protein 19
4dul_B6e-20916520163NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116688.13e-92NAC domain-containing protein 60-like
STRINGXP_008793755.11e-92(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2940424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-24NAC domain containing protein 47