PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010922193.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GRAS | ||||||||
Protein Properties | Length: 490aa MW: 54790 Da PI: 6.9281 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 442.4 | 3.1e-135 | 52 | 486 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 l++lLl+cA++v++g+le ++++L+++s la+pdgd+mqR+a++fteALa+r++rs+ +ly+al pps +s++ + e+l a++ f++++P+++++ XP_010922193.1 52 LIHLLLNCANHVAAGKLEHTNTCLENISLLAAPDGDTMQRIASHFTEALARRVLRSWRGLYRALhPPSVASTRPMPETLLARRHFFDLCPFVRLA 146 689*************************************************************5555555556********************* PP GRAS 95 hltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 +l+ NqaIlea+ege++vHi+D++ +s +QW+aLlqaL +Rpegpp+lR+T+v++ +ke l + rL+ Ae+l++pf+f++ v+ rl+ XP_010922193.1 147 FLVSNQAILEAMEGERMVHIVDLGgaASDAAQWAALLQALRARPEGPPHLRLTVVHD----QKEFLDVAAMRLSADAERLDIPFQFHP-VHARLD 236 ***********************8667999***************************....9**************************.799*** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrll.............................................................desvsle 221 +l++e+Lrvk+gEala+++vlqlh+ll +++++l+ XP_010922193.1 237 NLDVEMLRVKTGEALAISSVLQLHTLLaaddeaaavaghqrktpspftknsnmshlhrivqmshpgtlgellekdpvnvyspsqdsasSSPLALT 331 ***********************************************************************************999874444443 PP GRAS 222 s..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314 +++++L +++lsPk+++v+eqe++hn++ ++erf+eal++y+alfd+le+++pr seer+ vEr+l+g+ei+n+++cegaerrerhe+le+ XP_010922193.1 332 PspKTESLLASLWGLSPKIMTVAEQESNHNGPMLMERFTEALNFYAALFDCLESTAPRMSEERARVERMLFGEEIKNIITCEGAERRERHEKLER 426 3457889**************************************************************************************** PP GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 W +rle aGF+ vpls++a+ qa++ll+ ++ +gy+v ee+g+++++W+drpL+svSaW+ XP_010922193.1 427 WVQRLELAGFGRVPLSYFAMLQARRLLQSYGIEGYKVREEKGCFFICWHDRPLFSVSAWK 486 ***********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.561 | 26 | 466 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-132 | 52 | 486 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MGGMMQDDGS SSVTSSSLQC FSLMSLSPAA QLISPPVTWL GEMKSDERGL YLIHLLLNCA 60 NHVAAGKLEH TNTCLENISL LAAPDGDTMQ RIASHFTEAL ARRVLRSWRG LYRALHPPSV 120 ASTRPMPETL LARRHFFDLC PFVRLAFLVS NQAILEAMEG ERMVHIVDLG GAASDAAQWA 180 ALLQALRARP EGPPHLRLTV VHDQKEFLDV AAMRLSADAE RLDIPFQFHP VHARLDNLDV 240 EMLRVKTGEA LAISSVLQLH TLLAADDEAA AVAGHQRKTP SPFTKNSNMS HLHRIVQMSH 300 PGTLGELLEK DPVNVYSPSQ DSASSSPLAL TPSPKTESLL ASLWGLSPKI MTVAEQESNH 360 NGPMLMERFT EALNFYAALF DCLESTAPRM SEERARVERM LFGEEIKNII TCEGAERRER 420 HEKLERWVQR LELAGFGRVP LSYFAMLQAR RLLQSYGIEG YKVREEKGCF FICWHDRPLF 480 SVSAWKFKRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-37 | 44 | 485 | 11 | 378 | Protein SCARECROW |
5b3h_A | 8e-37 | 44 | 485 | 10 | 377 | Protein SCARECROW |
5b3h_D | 8e-37 | 44 | 485 | 10 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922193.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A2H3X0V5 | 0.0 | A0A2H3X0V5_PHODC; scarecrow-like protein 3 | ||||
STRING | XP_008776639.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-176 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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