PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921931.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 151aa    MW: 17456 Da    PI: 4.2082
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921931.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.6e-101762447
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     W+  Ed+++  a  q++ g   +W++I ++++ g+tl q+ +++q +
   XP_010921931.1 17 WSRSEDKIFELALVQYPEGtpdRWSLITAKLP-GKTLSQVLHHYQVL 62
                     ********************************.************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.6E-61365IPR001005SANT/Myb domain
CDDcd001672.96E-71663No hitNo description
Gene3DG3DSA:1.10.10.602.4E-51661IPR009057Homeodomain-like
SuperFamilySSF466891.5E-101666IPR009057Homeodomain-like
PfamPF002494.4E-71762IPR001005SANT/Myb domain
PROSITE profilePS500906.3651763IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MASSNMLIRS PQLQIEWSRS EDKIFELALV QYPEGTPDRW SLITAKLPGK TLSQVLHHYQ  60
VLIYDLELIE SGRVEIPDYK DNEQEGDSSS EQHPSDDWKI ELIESGRTEI PDYKHNEQVS  120
DNFSEERPPD DRKSSSGSSQ RDDEHEQPMD P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1417801174RADIALIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921931.11e-106protein RADIALIS-like 3
TrEMBLA0A3Q0I0I66e-35A0A3Q0I0I6_PHODC; transcription factor DIVARICATA-like
STRINGXP_008775022.16e-43(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.18e-19MYB family protein