PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010921790.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HB-other

Protein Properties

Length: 1074aa MW: 118569 Da PI: 9.4321

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010921790.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.6	1.3e-05	73	129	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++ +++ F + + ++e +e+++ +g+t +qV+ +F +R + +k XP_010921790.1 73 KKPRDLLNPKAVNYMQSIFSVKDAVGKKETREISALCGVTVTQVREFFAGQRSRVRK 129 79999************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	0.0089	72	134	IPR001356	Homeobox domain
CDD	cd00086	0.00275	73	129	No hit	No description
SuperFamily	SSF46689	5.13E-6	73	133	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-4	73	132	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	3.8E-5	259	348	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	6.54E-5	262	349	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1074 aa Download sequence Send to blast
MALVPGVSEG ALVELDVGNS AESLTALLNS QRELFHSQIE QLQKLVVAQC KLTGVNPLSQ 60 EMAAGALSIK IGKKPRDLLN PKAVNYMQSI FSVKDAVGKK ETREISALCG VTVTQVREFF 120 AGQRSRVRKF VRLSRDKATR VDASRASSNG CSLSSEQCLP VSEEALASSA DNMMIREQIP 180 VPGNAMIIST VTDGQHDTTD LKKVEEGPSC TALEETVPGI DTNDQKFLDN IFNLMRKEET 240 FSGQVKLMEW VLQIHNSAVL IWFLTKGGLT ILSTWLSQAA LEEQTTVLLV IFKVLCHLPL 300 HKALPVQMSA VLQTVNRLRF YRTSDISNRA RTLLSRWSKL FVRSQALKKP LLNSSKDSQK 360 EIVRKQRISE ILSDESWQSK IDIPEDILSL TEDMEKNRKS ESKQALKLLP ASSDELSKKH 420 GRSVSLPKTK ERRKVLLVER PDHKPSGRSV QLARAAPSNH SRPMSADDIQ KAKMRAMFMQ 480 NKYGKADTSN SENKPPKTED GNHVPSPSQT SNMLCSSRIP QLPPLRKDEE TKPSISTTNI 540 LPKKQDTLVI SKPNTSSQEQ LLEKLKCSQI QWQTPPVVIL DSTWSVGVGE NSKEVEVQMQ 600 RNRREKESFY SKPQDIPLDP KEPWDLEMDF DDSLTLEIPI EPSPDADIIE DSSCSPCSGG 660 ASNDETPATT SAPPINNGNP EPDLELLAVL LKNPDLVFAL TSGKGKSMTS EEMVVLLDML 720 KKNGVGLTEL MNGAADGPKE KPKEPEPTSL PSPTPPSDPA ARASWKSEFP TRNAPVLQPH 780 FRGSRVASAA LPSATPQNPS PAAVPPMVVK TQTAGLGLPQ TSTTILSVPE LTVTINPTSQ 840 HHPPHNFLPK RPPTSSAHQM PNSIYPLQHN SVPDHILPTK QCPVTNVPIA SPSVPQQESF 900 NHNPSPITLS ALLPISSRQQ SHLLAEPPKV SPKIPRWPPV SATIVGRPNP TPDPWIGVSN 960 GFSEVGAPNV QFFANQNNYN AYPKGPVQQP AVPPRSAGNR NEILDRTQLE TWSPEGSPVR 1020 LSAFRGGQKF SDARRDHGRN HRPEWSRQWD SGNRDHYRTG SNRRWRDRVG DRRR

Sequence ? help Back to Top

Protein Sequence Length: 1074 aa Download sequence Send to blast

MALVPGVSEG ALVELDVGNS AESLTALLNS QRELFHSQIE QLQKLVVAQC KLTGVNPLSQ  60
EMAAGALSIK IGKKPRDLLN PKAVNYMQSI FSVKDAVGKK ETREISALCG VTVTQVREFF  120
AGQRSRVRKF VRLSRDKATR VDASRASSNG CSLSSEQCLP VSEEALASSA DNMMIREQIP  180
VPGNAMIIST VTDGQHDTTD LKKVEEGPSC TALEETVPGI DTNDQKFLDN IFNLMRKEET  240
FSGQVKLMEW VLQIHNSAVL IWFLTKGGLT ILSTWLSQAA LEEQTTVLLV IFKVLCHLPL  300
HKALPVQMSA VLQTVNRLRF YRTSDISNRA RTLLSRWSKL FVRSQALKKP LLNSSKDSQK  360
EIVRKQRISE ILSDESWQSK IDIPEDILSL TEDMEKNRKS ESKQALKLLP ASSDELSKKH  420
GRSVSLPKTK ERRKVLLVER PDHKPSGRSV QLARAAPSNH SRPMSADDIQ KAKMRAMFMQ  480
NKYGKADTSN SENKPPKTED GNHVPSPSQT SNMLCSSRIP QLPPLRKDEE TKPSISTTNI  540
LPKKQDTLVI SKPNTSSQEQ LLEKLKCSQI QWQTPPVVIL DSTWSVGVGE NSKEVEVQMQ  600
RNRREKESFY SKPQDIPLDP KEPWDLEMDF DDSLTLEIPI EPSPDADIIE DSSCSPCSGG  660
ASNDETPATT SAPPINNGNP EPDLELLAVL LKNPDLVFAL TSGKGKSMTS EEMVVLLDML  720
KKNGVGLTEL MNGAADGPKE KPKEPEPTSL PSPTPPSDPA ARASWKSEFP TRNAPVLQPH  780
FRGSRVASAA LPSATPQNPS PAAVPPMVVK TQTAGLGLPQ TSTTILSVPE LTVTINPTSQ  840
HHPPHNFLPK RPPTSSAHQM PNSIYPLQHN SVPDHILPTK QCPVTNVPIA SPSVPQQESF  900
NHNPSPITLS ALLPISSRQQ SHLLAEPPKV SPKIPRWPPV SATIVGRPNP TPDPWIGVSN  960
GFSEVGAPNV QFFANQNNYN AYPKGPVQQP AVPPRSAGNR NEILDRTQLE TWSPEGSPVR  1020
LSAFRGGQKF SDARRDHGRN HRPEWSRQWD SGNRDHYRTG SNRRWRDRVG DRRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	347	364	KKPLLNSSKDSQKEIVRK

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010921790.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2H3ZAZ1	0.0	A0A2H3ZAZ1_PHODC; homeobox protein LUMINIDEPENDENS-like
STRING	XP_008810783.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]