PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010921780.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NF-YB

Protein Properties

Length: 181aa MW: 19864.9 Da PI: 6.5183

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010921780.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	177.4	1.4e-55	36	131	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal+tlGf+dyvep++ yl+kyre+eg+ XP_010921780.1 36 KEQDRLLPIANVGRIMKHILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALSTLGFDDYVEPMRRYLQKYREMEGD 130 79********************************************************************************************9 PP NF-YB 97 k 97 + XP_010921780.1 131 R 131 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.3E-54	33	156	IPR009072	Histone-fold
SuperFamily	SSF47113	9.36E-41	38	160	IPR009072	Histone-fold
Pfam	PF00808	1.9E-27	41	105	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.6E-20	69	87	No hit	No description
PROSITE pattern	PS00685	0	72	88	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.6E-20	88	106	No hit	No description
PRINTS	PR00615	2.6E-20	107	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MADGIGSSPD SEGQHNNFYT AQGASAGAAS GDGGLKEQDR LLPIANVGRI MKHILPPNAK 60 ISKEAKETMQ ECVSEFISFV TGEASDKCHK EKRKTVNGDD ICWALSTLGF DDYVEPMRRY 120 LQKYREMEGD RAASGSHNSR ANSVDARDEV RGEQQRYQSS GAGQLMFNAV ERNNASTSRR 180 L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	9e-45	35	126	1	92	Transcription factor HapC (Eurofung)
4g92_B	9e-45	35	126	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010921780.1	1e-134	nuclear transcription factor Y subunit B-1-like
Swissprot	O82248	2e-56	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A2H3X767	1e-111	A0A2H3X767_PHODC; nuclear transcription factor Y subunit B-1-like
STRING	XP_008779404.1	1e-112	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	1e-58	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]