PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921758.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 466aa    MW: 49546.3 Da    PI: 8.3247
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921758.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22e-114369127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C +++rtG C yG+rC+++H++
  XP_010921758.1 43 PGEPDCAYYMRTGSCGYGERCRYNHPR 69
                    5789*********************96 PP
2zf-CCCH37.93e-1291115327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +++rtGtCk+G++Ck++H++
  XP_010921758.1  91 QPVCEYYMRTGTCKFGSTCKYHHPR 115
                     689********************96 PP
3zf-CCCH406.3e-13136161227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG+Ck+G++CkF+H++
  XP_010921758.1 136 GEKECSYYMKTGQCKFGSTCKFHHPQ 161
                     7899********************97 PP
4zf-CCCH37.54e-12292318127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f++rtG Ck+G++C+++H++
  XP_010921758.1 292 PGQPECQFYMRTGDCKFGSTCRYHHPR 318
                     5789*********************96 PP
5zf-CCCH31.43.2e-10341364427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      +C ++a+ G Ck+G++CkF H++
  XP_010921758.1 341 QPCAYYAQHGVCKFGPTCKFDHPM 364
                     69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.1E-64269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5774270IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-94469IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-64770IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-54869IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.49788116IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-688115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-691115IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-1091115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-593115IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.572134162IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10136161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6137162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4140160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76291319IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-6291318IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9293318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5295319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164337365IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5337364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6340367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4341362IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-8341364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MELHGRSTAT EGAHPDPDTG LEESMWRLGL GGGGGDSPYP ERPGEPDCAY YMRTGSCGYG  60
ERCRYNHPRD RGARSGAGRT AAGEYPERVG QPVCEYYMRT GTCKFGSTCK YHHPRQGGGS  120
VRPVLLNYSG YPLRPGEKEC SYYMKTGQCK FGSTCKFHHP QPGGASVPSP APTFYPTVQP  180
PTVPSPHPYP PLASWQVGRP SVLPGSYMPG SYGPMLLSPG VVPVQGWGPY PAPVSPVVSP  240
GGQQTVQAGH LYGLSSQVTA SVPSYQGPYT PVSSSAGPSS GSQREHTFPE RPGQPECQFY  300
MRTGDCKFGS TCRYHHPRDW SMPKTNCALS PLGLPLRPGA QPCAYYAQHG VCKFGPTCKF  360
DHPMGTLSYS PSASSLSDMP VAPYPIGFSV ATLAPSSSSS DLRPEFISSK ESFPTRMPSS  420
ENISSGSVGS IFSRGSFLPH SLIQPQASTS SSSSSIGHGG EISSSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921758.10.0zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A2H3YQ320.0A0A2H3YQ32_PHODC; zinc finger CCCH domain-containing protein 6-like
STRINGXP_008802110.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-132C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]