PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010921623.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 24013.1 Da PI: 8.0321 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.3e-19 | 67 | 116 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg++ t+eeAa+a++ a+++++g XP_010921623.1 67 VYRGIRRRP-WGKWAAEIRDPRK---GMRVWLGTYSTPEEAARAYDVAAREIRG 116 69*******.**********954...39************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.974 | 67 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-36 | 67 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-23 | 67 | 125 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-33 | 67 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-13 | 67 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.17E-31 | 68 | 125 | No hit | No description |
PRINTS | PR00367 | 5.4E-11 | 68 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 90 | 106 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MCGGAIISDF LEFEGGRNLA PPPPPDFDAL FNSIDSKPLI PQAGEVEKTD RSSGVEEKSG 60 GKGRKNVYRG IRRRPWGKWA AEIRDPRKGM RVWLGTYSTP EEAARAYDVA AREIRGSKAK 120 LNFPDIIPVP KPQEAKKQRR VATAATEAVP WHPTAPAATR ESSAASSSSS VCSIATSPPL 180 DKALMERISN LETFLGQEDE AVEGGGAYDL RLWDDVRFIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-21 | 59 | 124 | 3 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010921623.1 | 1e-160 | ethylene-responsive transcription factor RAP2-3 | ||||
Swissprot | P42736 | 7e-36 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A2H3XJX6 | 1e-110 | A0A2H3XJX6_PHODC; ethylene-responsive transcription factor RAP2-3-like | ||||
STRING | XP_008784774.1 | 1e-110 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 6e-33 | ethylene-responsive element binding protein |