PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921545.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 339aa    MW: 37631.2 Da    PI: 6.5109
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921545.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l+ +   +G+g+W++++++ g++R++k+c++rw +yl
   XP_010921545.1 14 RGPWTAEEDAKLLAYTSTHGTGNWTSVPKKAGLKRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding46.11.1e-1470110446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +T+eE+el++ +++  G++ W+ Ia+ ++ gRt++++k++w++
   XP_010921545.1  70 FTPEEEELIITLHATIGSR-WSIIANQLP-GRTDNDVKNYWNT 110
                      8******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.383965IPR017930Myb domain
SuperFamilySSF466899.73E-3111108IPR009057Homeodomain-like
SMARTSM007175.5E-151363IPR001005SANT/Myb domain
PfamPF002493.9E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-241568IPR009057Homeodomain-like
CDDcd001671.38E-111661No hitNo description
PROSITE profilePS5129417.96366116IPR017930Myb domain
SMARTSM007171.1E-1366114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2469117IPR009057Homeodomain-like
CDDcd001676.54E-1170112No hitNo description
PfamPF002491.7E-1370110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRPPCCDRL NVKRGPWTAE EDAKLLAYTS THGTGNWTSV PKKAGLKRCG KSCRLRWTNY  60
LRPNLKHEGF TPEEEELIIT LHATIGSRWS IIANQLPGRT DNDVKNYWNT KLRKKLIQKG  120
IDPVTHRPIS EIIQSIGGLP TSATTSTGRG KYHSLHSTRI SCFNRDLKNV FLSKSTAFVD  180
PNFQESKPLT SNHFPQFYDV NAMTVATCAT SSEASSSSTV VTTQFNAPSL STEIKWSDFL  240
IADSSMGASS SQVQHAFLGG SPSWKAKMDI ESEQLMAESG VANQNDLVDE WYGALDGEVS  300
NVWGAPFDGS TSFVDAILDR DREMVFQFPE FLDDSYDIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921545.10.0transcription factor MYB35
TrEMBLA0A2H3YV940.0A0A2H3YV94_PHODC; transcription factor MYB35
STRINGXP_008804161.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118743439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.17e-73MYB family protein