PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921494.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 318aa    MW: 34996.1 Da    PI: 4.8894
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921494.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.9e-102532852355
                     SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +yp++ee+++LA+ +gL+++q+ +WF N+R ++
  XP_010921494.1 253 PYPTEEEKAKLAEMTGLDQKQINNWFINQRKRH 285
                     8*****************************885 PP
2ELK35.12.9e-12205226122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++Ll+KYsgyL++L++EF+
  XP_010921494.1 205 ELKEMLLKKYSGYLSNLRKEFL 226
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.5E-2158102IPR005540KNOX1
PfamPF037901.2E-2060100IPR005540KNOX1
SMARTSM012567.4E-26105156IPR005541KNOX2
PfamPF037911.2E-24108155IPR005541KNOX2
PROSITE profilePS5121311.261205225IPR005539ELK domain
PfamPF037891.1E-9205226IPR005539ELK domain
SMARTSM011881.9E-6205226IPR005539ELK domain
PROSITE profilePS5007113.038225288IPR001356Homeobox domain
SuperFamilySSF466893.25E-20227297IPR009057Homeodomain-like
SMARTSM003891.5E-14227292IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-27230290IPR009057Homeodomain-like
CDDcd000861.32E-13237289No hitNo description
PfamPF059201.2E-17245284IPR008422Homeobox KN domain
PROSITE patternPS000270263286IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEDLYSIHPV ISRGGEVAAV GSASSFAYLE ADRSQGGETA EASDISAGGG GGGSDLTDLI  60
KAQIANHPRY PSLVAAYIEC RKVGAPPEMA SLLEEIGRER YTSAGCGEIG ADPELDEFME  120
SYCRVLQRYK EELSKPFNEA ASFLNSIEMQ LSNLCKGRTT SSSTTAATGN SPSDEVVGSS  180
EEELSCGDVD ASECQESGSR LADHELKEML LKKYSGYLSN LRKEFLKKRK KGKLPKDARL  240
TLLDWWHTHY RWPYPTEEEK AKLAEMTGLD QKQINNWFIN QRKRHWKPSE DMRFALMEGV  300
SGGSSGTMLY FDTGTVGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220229LRKEFLKKRK
2226230KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921494.10.0homeobox protein knotted-1-like 1
SwissprotQ9FP291e-131KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLF2YNF20.0F2YNF2_ELAGV; Knotted-like homebox protein
STRINGXP_008781110.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-82KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]