PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921398.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 292aa    MW: 32739.6 Da    PI: 5.4034
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921398.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.66.8e-193178148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
   XP_010921398.1 31 RGPWTAEEDLILMNYIAAHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 78
                     89********************************************97 PP
2Myb_DNA-binding53.36.2e-1784127146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_010921398.1  84 RGNITPEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 127
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.0982682IPR017930Myb domain
SuperFamilySSF466897.11E-3228125IPR009057Homeodomain-like
SMARTSM007172.9E-153080IPR001005SANT/Myb domain
PfamPF002498.9E-173178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-243285IPR009057Homeodomain-like
CDDcd001671.39E-113378No hitNo description
SMARTSM007173.6E-1583131IPR001005SANT/Myb domain
PROSITE profilePS5129419.38183133IPR017930Myb domain
PfamPF002497.9E-1684127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2386132IPR009057Homeodomain-like
CDDcd001671.52E-1188127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEMGVGIGGE VHGRTCSSAT PPSEEDMDLR RGPWTAEEDL ILMNYIAAHG EGRWNSLARC  60
AGLKRTGKSC RLRWLNYLRP DVRRGNITPE EQLLILELHS RWGNRWSKIA QYLPGRTDNE  120
IKNYWRTRVQ KHAKQLRCDV NSKQFKDIMR YQWMPRLMER IWAASGSSAG TVYPNVGVPM  180
AGAHQPVEPG SESGQVKPSP ETSSAAGSSS DSVGMQFSSP PPLPADCFTD WYGGMQEGEN  240
EGGDWIHDVQ MGGWWPESLP SPGGYSNVGL PDFDQNAWSD NLWSVEDIWL QQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-252813124126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921398.30.0LOW QUALITY PROTEIN: transcription factor JAMYB
TrEMBLA0A2H3XBB20.0A0A2H3XBB2_PHODC; transcription factor MYB2
STRINGXP_008781174.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-84myb domain protein 78