PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921315.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 324aa    MW: 35896 Da    PI: 8.3876
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921315.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.6e-1796141147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v q+G+ +W++Ia+++  gR++k+c++rw++ 
   XP_010921315.1  96 RGHWRPAEDAKLKELVSQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 141
                      899*****************************.***********996 PP
2Myb_DNA-binding57.53e-18148191146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ 
   XP_010921315.1 148 RRAFSEEEEERLLAAHRLYGNK-WALIARLFP-GRTDNAVKNHWHV 191
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014474.71E-61727No hitNo description
PROSITE profilePS5129416.54391142IPR017930Myb domain
SMARTSM007171.9E-1495144IPR001005SANT/Myb domain
PfamPF002495.6E-1696141IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-2896189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2697149IPR009057Homeodomain-like
CDDcd001671.19E-1299140No hitNo description
PROSITE profilePS5129427.796143197IPR017930Myb domain
SMARTSM007171.1E-15147195IPR001005SANT/Myb domain
PfamPF002492.2E-15148190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-20150196IPR009057Homeodomain-like
CDDcd001672.64E-7159190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAPKHLKTTA EMGFFHPPPP PPPPPPPFHG GLGSSSGGME CRSGGIGFPM EREKNKGWGF  60
QGFSGEKGYH GDEKEDQGED GEGGSHENEQ PKLCARGHWR PAEDAKLKEL VSQYGPQNWN  120
LIAEKLEGRS GKSCRLRWFN QLDPRINRRA FSEEEEERLL AAHRLYGNKW ALIARLFPGR  180
TDNAVKNHWH VIMARKQREQ SSSYRRRKTS PSSPNPPSSQ ALPNKMEVNT SNNACSGSDE  240
KLVAGRNGCY EKFGDHGSSF PHGAPMMLVP CFDHSGLLSD STTEASATES VANHRSSAWL  300
RGETDNKREK ISLPFFDFLG VGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32941965107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921315.10.0transcription factor MYB105 isoform X2
SwissprotQ9SEZ47e-77MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2H3YEH51e-178A0A2H3YEH5_PHODC; transcription factor MYB105-like isoform X2
STRINGXP_008797327.11e-170(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.17e-72myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]