PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921312.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 373aa    MW: 41351 Da    PI: 7.8669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921312.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.3e-1796141147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v q+G+ +W++Ia+++  gR++k+c++rw++ 
   XP_010921312.1  96 RGHWRPAEDAKLKELVSQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 141
                      899*****************************.***********996 PP

2Myb_DNA-binding57.33.7e-18148191146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ 
   XP_010921312.1 148 RRAFSEEEEERLLAAHRLYGNK-WALIARLFP-GRTDNAVKNHWHV 191
                      678*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014476.02E-61727No hitNo description
PROSITE profilePS5129416.54391142IPR017930Myb domain
SMARTSM007171.9E-1495144IPR001005SANT/Myb domain
PfamPF002496.9E-1696141IPR001005SANT/Myb domain
SuperFamilySSF466895.24E-2896189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2697149IPR009057Homeodomain-like
CDDcd001676.59E-1399140No hitNo description
PROSITE profilePS5129427.796143197IPR017930Myb domain
SMARTSM007171.1E-15147195IPR001005SANT/Myb domain
PfamPF002492.7E-15148190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-20150196IPR009057Homeodomain-like
CDDcd001671.59E-7159190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAPKHLKTTA EMGFFHPPPP PPPPPPPFHG GLGSSSGGME CRSGGIGFPM EREKNKGWGF  60
QGFSGEKGYH GDEKEDQGED GEGGSHENEQ PKLCARGHWR PAEDAKLKEL VSQYGPQNWN  120
LIAEKLEGRS GKSCRLRWFN QLDPRINRRA FSEEEEERLL AAHRLYGNKW ALIARLFPGR  180
TDNAVKNHWH VIMARKQREQ SSSYRRRKTS PSSPNPPSSQ ALPNKMEVNT SNNACSGEST  240
ITSTRDESAS TCTDLSLSSF TSGIIPTFFT RYSRSQQPQP YEFLMGSDEK LVAGRNGCYE  300
KFGDHGSSFP HGAPMMLVPC FDHSGLLSDS TTEASATESV ANHRSSAWLR GETDNKREKI  360
SLPFFDFLGV GAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32961967107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921312.10.0transcription factor CSA isoform X1
RefseqXP_010921314.10.0transcription factor CSA isoform X1
SwissprotQ5NBM88e-77CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A2H3YDU90.0A0A2H3YDU9_PHODC; transcription factor CSA-like isoform X1
STRINGXP_008797327.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-69myb domain protein 105
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]