PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010921141.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bZIP

Protein Properties

Length: 390aa MW: 42219.9 Da PI: 6.381

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010921141.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.6	7.3e-10	196	243	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l XP_010921141.1 196 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLF 243 9****************************************9888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.1E-15	192	256	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.645	194	257	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.8E-10	196	250	No hit	No description
SuperFamily	SSF57959	8.84E-11	196	247	No hit	No description
Pfam	PF00170	1.2E-8	196	242	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.25E-24	197	246	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MLPKCQDPRH PPNPNANHSP NLDLPSSFPP NAPPVAAGTM AMFQSAGTTP PPRGAHHRRA 60 RSEMAFRITD DIDLSSGDPL AGGGFDEIGS EDDLFSTFMD IEKIGCRPEG SGSGSEGGVF 120 GDPATESYKG GEDRKIDNAT GAAAAVRPKH RHSNSIDGSS MMSSGTTRGE GVFGDVEAKK 180 AMTAEQLAEL AAIDPKRAKR ILANRQSAAR SKERKARYIS ELERKVQTLQ TEATTLSAQL 240 TLFQRDTTGL SAENAELKLR LQAMEQQAQL RDALNEALRQ EVERLRIATG EISNPGETFN 300 MGLQHVPYNP SFYTLPQQQP VHHQGIQLQP QFHQSQPNVS NHQFAHSNAL PDMMQQDPLG 360 RLQGLDISKG SLIVKTESSS ISASESSSTF

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MLPKCQDPRH PPNPNANHSP NLDLPSSFPP NAPPVAAGTM AMFQSAGTTP PPRGAHHRRA  60
RSEMAFRITD DIDLSSGDPL AGGGFDEIGS EDDLFSTFMD IEKIGCRPEG SGSGSEGGVF  120
GDPATESYKG GEDRKIDNAT GAAAAVRPKH RHSNSIDGSS MMSSGTTRGE GVFGDVEAKK  180
AMTAEQLAEL AAIDPKRAKR ILANRQSAAR SKERKARYIS ELERKVQTLQ TEATTLSAQL  240
TLFQRDTTGL SAENAELKLR LQAMEQQAQL RDALNEALRQ EVERLRIATG EISNPGETFN  300
MGLQHVPYNP SFYTLPQQQP VHHQGIQLQP QFHQSQPNVS NHQFAHSNAL PDMMQQDPLG  360
RLQGLDISKG SLIVKTESSS ISASESSSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010921141.2	0.0	transcription factor RF2b
Swissprot	Q6S4P4	1e-134	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2H3XEK2	0.0	A0A2H3XEK2_PHODC; transcription factor RF2b-like isoform X1
STRING	XP_008782655.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-90	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]