PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010921105.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 389aa MW: 42133.7 Da PI: 9.8106

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010921105.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.1	1.8e-53	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ XP_010921105.1 16 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-TIIAEVDLYKFDPWELPGKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTS 109 79**************************.89***********999999***********************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg kt+W+mheyrl XP_010921105.1 110 gGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 143 77788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-64	10	179	IPR003441	NAC domain
PROSITE profile	PS51005	62.087	16	179	IPR003441	NAC domain
Pfam	PF02365	7.1E-28	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MESTDSSGSQ QQQPQLPPGF RFHPTDEELV VHYLKKKAAS VPLPVTIIAE VDLYKFDPWE 60 LPGKANFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPILTSG GTQKVGVKKA 120 LVFYGGKPPK GIKTNWIMHE YRLADSSPSS SARPPGGDVG SKKGSLRLDD WVLCRIYKKN 180 SSSNNNGRLT DRDKEDSMDG MLAPPALTPH RAIGTQTNPR PQPQRAPNNY TALLGNDETF 240 FEGLLTTEDG LAANPMTQFA GAPRAKLDLS TVQTNSGTLA PKRPLTSPYW SDGGMGTPPP 300 TKRFQGCNHG SSGNSTTTNN NTSSGSNSSA TTNNNNNSNN NHGGHTITAL LNQIPQGTAY 360 QPQTILSSLG DGSAIFRQPY QLSGMNWSS

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MESTDSSGSQ QQQPQLPPGF RFHPTDEELV VHYLKKKAAS VPLPVTIIAE VDLYKFDPWE  60
LPGKANFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPILTSG GTQKVGVKKA  120
LVFYGGKPPK GIKTNWIMHE YRLADSSPSS SARPPGGDVG SKKGSLRLDD WVLCRIYKKN  180
SSSNNNGRLT DRDKEDSMDG MLAPPALTPH RAIGTQTNPR PQPQRAPNNY TALLGNDETF  240
FEGLLTTEDG LAANPMTQFA GAPRAKLDLS TVQTNSGTLA PKRPLTSPYW SDGGMGTPPP  300
TKRFQGCNHG SSGNSTTTNN NTSSGSNSSA TTNNNNNSNN NHGGHTITAL LNQIPQGTAY  360
QPQTILSSLG DGSAIFRQPY QLSGMNWSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-76	13	185	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-76	13	185	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-76	13	185	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-76	13	185	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-76	13	185	17	174	NAC domain-containing protein 19
3swm_B	1e-76	13	185	17	174	NAC domain-containing protein 19
3swm_C	1e-76	13	185	17	174	NAC domain-containing protein 19
3swm_D	1e-76	13	185	17	174	NAC domain-containing protein 19
3swp_A	1e-76	13	185	17	174	NAC domain-containing protein 19
3swp_B	1e-76	13	185	17	174	NAC domain-containing protein 19
3swp_C	1e-76	13	185	17	174	NAC domain-containing protein 19
3swp_D	1e-76	13	185	17	174	NAC domain-containing protein 19
4dul_A	1e-76	13	185	14	171	NAC domain-containing protein 19
4dul_B	1e-76	13	185	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010921105.1	0.0	NAC transcription factor NAM-B2
Swissprot	A0SPJ9	1e-115	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A2H3YI95	0.0	A0A2H3YI95_PHODC; NAC transcription factor 25-like
STRING	XP_008799210.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7572	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	2e-96	NAC domain containing protein 2

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]