PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010921002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 193aa MW: 21864 Da PI: 11.4358 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H+++H XP_010921002.1 96 HECSLCPKRFRTGRALGGHMKSH 118 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.6E-4 | 84 | 118 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.11E-6 | 92 | 122 | No hit | No description |
Pfam | PF13912 | 1.2E-10 | 95 | 120 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.349 | 96 | 118 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MTRAETPSPP LITWSLTGKR GRKIPQPTHR EPESQERDIA RFLLTLSSRP PAPDGDLRRL 60 GEAVANTGSC RWDGDGERIR RSRRRRRRAT TKARVHECSL CPKRFRTGRA LGGHMKSHWE 120 RDLHGRVVKK KTRKLSSLLG LGLGLRFDLE LDLPSPSPPN PKLLVFSSAG KERKERDEEY 180 GGDSLAVDPL FPF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 86 | RRSRRRRR |
2 | 79 | 87 | RRSRRRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017699093.1 | 2e-61 | zinc finger protein ZAT10-like | ||||
TrEMBL | A0A2H3ZSH7 | 5e-60 | A0A2H3ZSH7_PHODC; zinc finger protein ZAT10-like | ||||
STRING | XP_008794234.1 | 9e-61 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 4e-07 | C2H2-like zinc finger protein |