PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920945.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 335aa    MW: 37899.5 Da    PI: 9.4207
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920945.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-1666110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+rWT+eE+e+++da  ++G + Wk+I   +g ++t  q++s+ qky
   XP_010920945.1  66 RDRWTAEEHERFLDALLLFGRD-WKKIEDFVG-TKTTIQIRSHAQKY 110
                      89******************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-1760116IPR009057Homeodomain-like
PROSITE profilePS5129418.82961115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-864117IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-1764113IPR006447Myb domain, plants
SMARTSM007176.1E-1165113IPR001005SANT/Myb domain
PfamPF002491.2E-1266110IPR001005SANT/Myb domain
CDDcd001671.18E-868111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAFRRNPTLR LLFYLCFPFF LVFRFFRCFS YPLGNSSSSS LHLRSMAAAS GSGKKLRKPY  60
TITKSRDRWT AEEHERFLDA LLLFGRDWKK IEDFVGTKTT IQIRSHAQKY FLKVQKIGLG  120
NHVPPPHPKC KVAHPHPQNY TDNFIMPLQA SIPCPSASSS LIPACAVWDG PSSVKNYSEA  180
NSLTNCYAVP PEVEGDNGLM GKASIHNQNI SWIGSSSRSW LTPEATKQKN PQSSYHLVPD  240
FAQVYRFLGG MFDPDITCPV EVYLEKLKQM DPITVKTVMM LMQNLTFNLS SPDFEPLRRW  300
LSTYDANTKT IGVITETAAP AQADRWLLAY DVNSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920945.10.0protein REVEILLE 8
TrEMBLA0A2H3Y2D60.0A0A2H3Y2D6_PHODC; protein REVEILLE 8
STRINGXP_008792393.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.13e-83MYB_related family protein