PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010920920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 21558.4 Da PI: 5.9777 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.5 | 2.1e-42 | 41 | 140 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la XP_010920920.1 41 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTTAHRVFGASNIIKFLQDLPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLA 135 7********************************************************************************************** PP DUF260 96 llkee 100 ++++ XP_010920920.1 136 RAQAD 140 99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.002 | 40 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.6E-43 | 41 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MGSSDTTTTF HHHASSSSPS SSPTSSPPSL PPTPPPVVLS PCAACKILRR RCVDKCVLAP 60 YFPPTEPLKF TTAHRVFGAS NIIKFLQDLP ESQRADAVSS MVYEANARIR DPVYGCAGAI 120 CQLQKQVSEL QAQLARAQAD LVNMQAQQAN LIALVCVEMA QSQQPPAESL ITSPYVSQND 180 TFFLDDSSHG SLWEDPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-42 | 36 | 152 | 6 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-42 | 36 | 152 | 6 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010920920.1 | 1e-145 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 1e-75 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2H3Y960 | 1e-111 | A0A2H3Y960_PHODC; LOB domain-containing protein 1 | ||||
STRING | XP_008795252.1 | 1e-112 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-65 | LOB domain-containing protein 1 |