PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010920887.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

S1Fa-like

Protein Properties

Length: 80aa MW: 8744.45 Da PI: 10.659

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010920887.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	134.8	2.1e-42	13	80	4	70
S1FA 4 akvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +++ea kGlnPGl+vllv+ggl+l+flvgny+ly+yaqk+lPP+kkkPvskkk+kre+lkqGv++PGe XP_010920887.1 13 VREEAtKGLNPGLVVLLVIGGLVLLFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE 80 556766*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	8.6E-41	16	80	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MGEQFSGSAE NLVREEATKG LNPGLVVLLV IGGLVLLFLV GNYALYMYAQ KTLPPKKKKP 60 VSKKKMKRER LKQGVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010920886.1	7e-50	DNA-binding protein S1FA isoform X2
Refseq	XP_010920887.1	7e-50	DNA-binding protein S1FA isoform X2
Refseq	XP_010920888.1	7e-50	DNA-binding protein S1FA isoform X2
Refseq	XP_010920889.1	7e-50	DNA-binding protein S1FA isoform X2
Swissprot	Q7XLX6	1e-23	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	W9SCA3	3e-23	W9SCA3_9ROSA; DNA-binding protein S1FA1
STRING	XP_010104121.1	5e-24	(Morus notabilis)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]