PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 1672aa    MW: 183046 Da    PI: 6.6508
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920880.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-08760801346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE e++ +  + +G++ +++I+  ++ ++t  +c+++++k
   XP_010920880.1 760 PWTQEEKEIFMEMLATFGKD-FTKISCSLN-HKTIADCIEFYYK 801
                      8*****************99.*********.***********98 PP

2Myb_DNA-binding30.77.4e-109731012445
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding    4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                       WT eE   +++a  ++G++ +++I+r++g +R++ qck ++ 
   XP_010920880.1  973 WTDEEKSVFIRALSMYGKD-FARISRCVG-TRSRGQCKIFFS 1012
                       *****************99.*********.********8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.19E-13744807IPR009057Homeodomain-like
PROSITE profilePS5129313.405756807IPR017884SANT domain
SMARTSM007179.6E-8757805IPR001005SANT/Myb domain
PfamPF002499.9E-7759801IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-5759804IPR009057Homeodomain-like
PROSITE profilePS5129313.6189681019IPR017884SANT domain
SMARTSM007174.5E-79691017IPR001005SANT/Myb domain
SuperFamilySSF466891.56E-109721020IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-59721013IPR009057Homeodomain-like
PfamPF002496.6E-89731011IPR001005SANT/Myb domain
CDDcd001673.78E-79731011No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1672 aa     Download sequence    Send to blast
MPPEPVPWDR KDFVLKERKH ERGPGSEALS TGSSFSAPRW REPCHGPRDF PRASPRRPPS  60
GHYRQGGSYH QIYPEESGGH GCTPSRSDRF WLEDESFRPS SGRYGGGGGG RSSSGGSRES  120
RGSFRRFPYW DSVDFSRQQH HDPHMTAQRS VAVPIPPASQ PPLKDPNDKT GGDVDDGSGT  180
GHRFDQDHSL GSISWKPLKW SRPGSVSSTK AGRSESEETG LEVLLPPGKE SPIRSPVTSP  240
APSDEGAPRK KPRLGWGQGL AKYEKQKVEG SLDPSGTAAK VAVNDTSPKV VGLAGCPSPA  300
TPGSFTCSSS PAGIEEKPCI KAVNGENDTS YFCDSLEEFS TRLGYMEGNP INALNTLLAD  360
LLQTEDASSG DSTYSAMNKL LLLKSGISKE LEKTACELDL FENELKSMDS DAENDPCRSS  420
FVIPPNSAPE PCIESSDVAS KDSNPSKDHE FSSSACTGNT TLYTNSLNEH NTEIKDGDVD  480
NPQAASSRFN DSAFSSMGIY DHDDEKLAGR FEIFEDRFKI PEVQHFILSD VERPALICDH  540
GDGNCVEAGR SSENGNSEAS LHGKTDCNLI TLIMSTNWDA AKRASQVFHK ALPTDPPQFD  600
IWESVKLLSQ RKNDLRIKEK LAIHKYLLKF KEQVLALKFR ALHHLWKEDL RLLSIRKHRT  660
KSSKRFELSS RASQGGSQKQ RCSFRSRFAL PGNLTLVPTT EILEFSSKLL SDSQIKLYRN  720
NLNMPALILD EERKQTKFIT HNGLIEDPVF FEKERAMINP WTQEEKEIFM EMLATFGKDF  780
TKISCSLNHK TIADCIEFYY KNHKSESFKE VKKRLDLKKQ RQCMPTSSYL VTSGKKWNRG  840
INAASLDMLG VASVVAAYSS GNAKSQQRYA GRSIHGTYNG LKVSCGNYRS LERVSSVEIP  900
GHERETVAAD VLAGMCGALS SEGMSSCVTS SIDPVEKMNY MAVERPLTPD VVQNLDEDTC  960
SNEGCGDLDS FDWTDEEKSV FIRALSMYGK DFARISRCVG TRSRGQCKIF FSKARKCLGL  1020
DVIHQGISNG GMPLGDANGG RGDTDDACAA EMDSAICSTQ SCSKMDADVS QSVAKINIEG  1080
CVHAAMAPLQ AETDRSSEQG VVGGIILEGE DGKVDKHVSV LPENKLVSGG HNPQSVITLK  1140
KNADAALRSN ESVQLHEAVE CVDAEMKVGG SIVSPVEPVF TACVEVESKS HIDDVVQQKD  1200
NDGKYSVDVL KKEVDVPLLM PETGSRNKQQ MDADLTNGGK IFSASNSKAD VNSLLPGKKV  1260
VDCPRSTFSP DYRHQIPLDL LQCLQKKPQG ISLKQENPHS APLNSVLPDP SSVCFEGPHH  1320
VASQANLNFE EHENKQHHNP VVRDLYQQYM MRNPSLNQVD KPLQILNGYP LQVINQEVKR  1380
EADPLIGEKP VLMESHPKKN GVSQSNQFFI SEVRGDHCNH SSLSHPRPGV LFPLSEAQPE  1440
AQLRHCSQNA CSEPEEQMHR TSDVKLFGQI ICHPSSSQKS DSSPHECNSK PSAPRINRSS  1500
TWKPSDAVKA GMPFASTSGN SGHVGLEELP ARSYGFCDGN IVQTGFSSLP ESAVMLAKYH  1560
GSLAGMSFYS AKDGVPCSNG ILAQQSYMQH LASDGKRLES FCELQKRNGI EMVSGFQQQG  1620
RVARLGTNMV GGGILSSGGV SDPVAALKMH YAARAKVLSS EMESWRGDIG GR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C7e-16724809994NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D7e-16724809994NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920880.10.0uncharacterized protein LOC105044622 isoform X3
TrEMBLA0A2H3ZRW30.0A0A2H3ZRW3_PHODC; uncharacterized protein LOC103709716 isoform X3
STRINGXP_008793426.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-127MYB family protein