PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010920880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 1672aa MW: 183046 Da PI: 6.6508 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.4e-08 | 760 | 801 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e++ + + +G++ +++I+ ++ ++t +c+++++k XP_010920880.1 760 PWTQEEKEIFMEMLATFGKD-FTKISCSLN-HKTIADCIEFYYK 801 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 30.7 | 7.4e-10 | 973 | 1012 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++a ++G++ +++I+r++g +R++ qck ++ XP_010920880.1 973 WTDEEKSVFIRALSMYGKD-FARISRCVG-TRSRGQCKIFFS 1012 *****************99.*********.********8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.19E-13 | 744 | 807 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.405 | 756 | 807 | IPR017884 | SANT domain |
SMART | SM00717 | 9.6E-8 | 757 | 805 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-7 | 759 | 801 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-5 | 759 | 804 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.618 | 968 | 1019 | IPR017884 | SANT domain |
SMART | SM00717 | 4.5E-7 | 969 | 1017 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.56E-10 | 972 | 1020 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-5 | 972 | 1013 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-8 | 973 | 1011 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.78E-7 | 973 | 1011 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1672 aa Download sequence Send to blast |
MPPEPVPWDR KDFVLKERKH ERGPGSEALS TGSSFSAPRW REPCHGPRDF PRASPRRPPS 60 GHYRQGGSYH QIYPEESGGH GCTPSRSDRF WLEDESFRPS SGRYGGGGGG RSSSGGSRES 120 RGSFRRFPYW DSVDFSRQQH HDPHMTAQRS VAVPIPPASQ PPLKDPNDKT GGDVDDGSGT 180 GHRFDQDHSL GSISWKPLKW SRPGSVSSTK AGRSESEETG LEVLLPPGKE SPIRSPVTSP 240 APSDEGAPRK KPRLGWGQGL AKYEKQKVEG SLDPSGTAAK VAVNDTSPKV VGLAGCPSPA 300 TPGSFTCSSS PAGIEEKPCI KAVNGENDTS YFCDSLEEFS TRLGYMEGNP INALNTLLAD 360 LLQTEDASSG DSTYSAMNKL LLLKSGISKE LEKTACELDL FENELKSMDS DAENDPCRSS 420 FVIPPNSAPE PCIESSDVAS KDSNPSKDHE FSSSACTGNT TLYTNSLNEH NTEIKDGDVD 480 NPQAASSRFN DSAFSSMGIY DHDDEKLAGR FEIFEDRFKI PEVQHFILSD VERPALICDH 540 GDGNCVEAGR SSENGNSEAS LHGKTDCNLI TLIMSTNWDA AKRASQVFHK ALPTDPPQFD 600 IWESVKLLSQ RKNDLRIKEK LAIHKYLLKF KEQVLALKFR ALHHLWKEDL RLLSIRKHRT 660 KSSKRFELSS RASQGGSQKQ RCSFRSRFAL PGNLTLVPTT EILEFSSKLL SDSQIKLYRN 720 NLNMPALILD EERKQTKFIT HNGLIEDPVF FEKERAMINP WTQEEKEIFM EMLATFGKDF 780 TKISCSLNHK TIADCIEFYY KNHKSESFKE VKKRLDLKKQ RQCMPTSSYL VTSGKKWNRG 840 INAASLDMLG VASVVAAYSS GNAKSQQRYA GRSIHGTYNG LKVSCGNYRS LERVSSVEIP 900 GHERETVAAD VLAGMCGALS SEGMSSCVTS SIDPVEKMNY MAVERPLTPD VVQNLDEDTC 960 SNEGCGDLDS FDWTDEEKSV FIRALSMYGK DFARISRCVG TRSRGQCKIF FSKARKCLGL 1020 DVIHQGISNG GMPLGDANGG RGDTDDACAA EMDSAICSTQ SCSKMDADVS QSVAKINIEG 1080 CVHAAMAPLQ AETDRSSEQG VVGGIILEGE DGKVDKHVSV LPENKLVSGG HNPQSVITLK 1140 KNADAALRSN ESVQLHEAVE CVDAEMKVGG SIVSPVEPVF TACVEVESKS HIDDVVQQKD 1200 NDGKYSVDVL KKEVDVPLLM PETGSRNKQQ MDADLTNGGK IFSASNSKAD VNSLLPGKKV 1260 VDCPRSTFSP DYRHQIPLDL LQCLQKKPQG ISLKQENPHS APLNSVLPDP SSVCFEGPHH 1320 VASQANLNFE EHENKQHHNP VVRDLYQQYM MRNPSLNQVD KPLQILNGYP LQVINQEVKR 1380 EADPLIGEKP VLMESHPKKN GVSQSNQFFI SEVRGDHCNH SSLSHPRPGV LFPLSEAQPE 1440 AQLRHCSQNA CSEPEEQMHR TSDVKLFGQI ICHPSSSQKS DSSPHECNSK PSAPRINRSS 1500 TWKPSDAVKA GMPFASTSGN SGHVGLEELP ARSYGFCDGN IVQTGFSSLP ESAVMLAKYH 1560 GSLAGMSFYS AKDGVPCSNG ILAQQSYMQH LASDGKRLES FCELQKRNGI EMVSGFQQQG 1620 RVARLGTNMV GGGILSSGGV SDPVAALKMH YAARAKVLSS EMESWRGDIG GR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 7e-16 | 724 | 809 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 7e-16 | 724 | 809 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010920880.1 | 0.0 | uncharacterized protein LOC105044622 isoform X3 | ||||
TrEMBL | A0A2H3ZRW3 | 0.0 | A0A2H3ZRW3_PHODC; uncharacterized protein LOC103709716 isoform X3 | ||||
STRING | XP_008793426.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-127 | MYB family protein |