PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010920878.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 1673aa MW: 183117 Da PI: 6.6508 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.4e-08 | 761 | 802 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e++ + + +G++ +++I+ ++ ++t +c+++++k XP_010920878.1 761 PWTQEEKEIFMEMLATFGKD-FTKISCSLN-HKTIADCIEFYYK 802 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 30.7 | 7.4e-10 | 974 | 1013 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++a ++G++ +++I+r++g +R++ qck ++ XP_010920878.1 974 WTDEEKSVFIRALSMYGKD-FARISRCVG-TRSRGQCKIFFS 1013 *****************99.*********.********8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.19E-13 | 745 | 808 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.405 | 757 | 808 | IPR017884 | SANT domain |
SMART | SM00717 | 9.6E-8 | 758 | 806 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-7 | 760 | 802 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-5 | 760 | 805 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.618 | 969 | 1020 | IPR017884 | SANT domain |
SMART | SM00717 | 4.5E-7 | 970 | 1018 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.56E-10 | 973 | 1021 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-5 | 973 | 1014 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-8 | 974 | 1012 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.79E-7 | 974 | 1012 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1673 aa Download sequence Send to blast |
MPPEPVPWDR KDFVLKERKH ERGPGSEALS TGSSFSAPRW REPCHGPRDF PRASPRRPPS 60 GHYRQGGSYH QIYPEESGGH GCTPSRSDRF WLEDESFRPS SGRYGGGGGG RSSSGGSRES 120 RGSFRRFPYW DSVDFSRQQH HDPHMTAQRS VAVPIPPASQ PPLKDPNDKT GGDVDDGSGT 180 GHRFDQDHSL GSISWKPLKW SRPGSVSSTK AGRSESEETG LEVLLPPGKE SPIRSPVTSP 240 APSDEGAPRK KPRLGWGQGL AKYEKQKVEG SLDPSGTAAK VAVNDTSPKV VGLAGCPSPA 300 TPGSFTCSSS PAGIEEKPCI KAVNGENDTS YFCDSLEEFS TRLGYMEGNP INALNTLLAD 360 LLQTEDASSG DSTYSAMNKL LLLKSGISKE LEKTACELDL FENELKSMDS DAENDPCRSS 420 FVIPPNSAPE PCIESSDVAS KDSNPSKDHE FSSSACTGNT TLYTNSLNEH NTEIKDGDVD 480 NPQAASSRFN DSAFSSMGIY DHDDEKLAGR FEIFEDRFKI PEVQHFILSD VERPALICDH 540 GDGNCVEAGR SSENGNSEAS LHGKTDCNLI TLIMSTNWDA AKRASQVFHK ALPTDPPQFD 600 IWESVKLLSQ RKNDLRIKEK LAIHKYLLKF KEQVLALKFR ALHHLWKEDL RLLSIRKHRT 660 KSSKRFELSS RASQGGSQKQ RCSFRSRFAL PAGNLTLVPT TEILEFSSKL LSDSQIKLYR 720 NNLNMPALIL DEERKQTKFI THNGLIEDPV FFEKERAMIN PWTQEEKEIF MEMLATFGKD 780 FTKISCSLNH KTIADCIEFY YKNHKSESFK EVKKRLDLKK QRQCMPTSSY LVTSGKKWNR 840 GINAASLDML GVASVVAAYS SGNAKSQQRY AGRSIHGTYN GLKVSCGNYR SLERVSSVEI 900 PGHERETVAA DVLAGMCGAL SSEGMSSCVT SSIDPVEKMN YMAVERPLTP DVVQNLDEDT 960 CSNEGCGDLD SFDWTDEEKS VFIRALSMYG KDFARISRCV GTRSRGQCKI FFSKARKCLG 1020 LDVIHQGISN GGMPLGDANG GRGDTDDACA AEMDSAICST QSCSKMDADV SQSVAKINIE 1080 GCVHAAMAPL QAETDRSSEQ GVVGGIILEG EDGKVDKHVS VLPENKLVSG GHNPQSVITL 1140 KKNADAALRS NESVQLHEAV ECVDAEMKVG GSIVSPVEPV FTACVEVESK SHIDDVVQQK 1200 DNDGKYSVDV LKKEVDVPLL MPETGSRNKQ QMDADLTNGG KIFSASNSKA DVNSLLPGKK 1260 VVDCPRSTFS PDYRHQIPLD LLQCLQKKPQ GISLKQENPH SAPLNSVLPD PSSVCFEGPH 1320 HVASQANLNF EEHENKQHHN PVVRDLYQQY MMRNPSLNQV DKPLQILNGY PLQVINQEVK 1380 READPLIGEK PVLMESHPKK NGVSQSNQFF ISEVRGDHCN HSSLSHPRPG VLFPLSEAQP 1440 EAQLRHCSQN ACSEPEEQMH RTSDVKLFGQ IICHPSSSQK SDSSPHECNS KPSAPRINRS 1500 STWKPSDAVK AGMPFASTSG NSGHVGLEEL PARSYGFCDG NIVQTGFSSL PESAVMLAKY 1560 HGSLAGMSFY SAKDGVPCSN GILAQQSYMQ HLASDGKRLE SFCELQKRNG IEMVSGFQQQ 1620 GRVARLGTNM VGGGILSSGG VSDPVAALKM HYAARAKVLS SEMESWRGDI GGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 7e-16 | 725 | 810 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 7e-16 | 725 | 810 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010920878.1 | 0.0 | uncharacterized protein LOC105044622 isoform X1 | ||||
Refseq | XP_010920879.1 | 0.0 | uncharacterized protein LOC105044622 isoform X1 | ||||
TrEMBL | A0A2H3Y4R5 | 0.0 | A0A2H3Y4R5_PHODC; uncharacterized protein LOC103709716 isoform X1 | ||||
STRING | XP_008793426.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6299 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-127 | MYB family protein |