PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920699.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 243aa    MW: 27821.1 Da    PI: 5.0867
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920699.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-14855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++lv  v ++G ++W+  a+  g++Rt+k+c++rw +yl
   XP_010920699.1  8 KGPWTEQEDLQLVWFVGLFGERRWDFLAKVSGLNRTGKSCRLRWVNYL 55
                     79********************************************97 PP
2Myb_DNA-binding55.11.7e-1761106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
   XP_010920699.1  61 RGRMTPQEQHLVLELHAKWGNR-WSLIARKLP-GRTDNEIKNYWRTHM 106
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.035355IPR017930Myb domain
SMARTSM007172.0E-12757IPR001005SANT/Myb domain
SuperFamilySSF466894.9E-287102IPR009057Homeodomain-like
PfamPF002494.1E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-18962IPR009057Homeodomain-like
CDDcd001672.31E-81055No hitNo description
PROSITE profilePS5129426.43956110IPR017930Myb domain
SMARTSM007171.8E-1560108IPR001005SANT/Myb domain
PfamPF002491.3E-1561105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2363109IPR009057Homeodomain-like
CDDcd001675.34E-1063106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVKEETRKGP WTEQEDLQLV WFVGLFGERR WDFLAKVSGL NRTGKSCRLR WVNYLHPGLK  60
RGRMTPQEQH LVLELHAKWG NRWSLIARKL PGRTDNEIKN YWRTHMRKKA QEGKRSASSL  120
SPSSSSSSNL SSSLSDPPLE EIDVEKHERD DMIEGTSVMT VTGLEENGEG VKGYPMDQIW  180
NDIATSELVS DLSFEGYKDE AGDFSCPPVS SPIWDYCSDS LWKIDDDEFK TFAPMADNTI  240
RES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-2681104105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920699.20.0myb-related protein MYBAS1
SwissprotQ4JL761e-80MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A2H3YA751e-128A0A2H3YA75_PHODC; myb-related protein MYBAS1-like
STRINGXP_008795619.11e-129(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-76myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]