PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920571.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 699aa    MW: 76985 Da    PI: 9.5082
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920571.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07600649147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_010920571.1 600 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFddaKHRTYVDLKDKWKTL 649
                      6789999*******************9988889**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.14E-5406495IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.733595654IPR017930Myb domain
SMARTSM007172.0E-7599652IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-10600650IPR009057Homeodomain-like
SuperFamilySSF466893.95E-15601682IPR009057Homeodomain-like
CDDcd116601.87E-17601651No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MVLQKRLDYG SSGCQVAAMP HVPRSARGKR SVRKKVEDNR MGAFDLLATV AGRLLSERHN  60
SLTPCNITGT SNPTAGKEII KLEHFKDEKP FKAETFDQGS CDESTLGSDI VIQRQGGYAS  120
KEHSQTPNAT RSSPASAIVK SEKKDSFAGE SIISSTWAER GYSLGTNTIP KKCGTQRCIP  180
GSMESYEYEG DGINTPLQAE WLISGKVIER NAPDMYSSED PMDLDTKPPA LISSDSSAEV  240
PSCRDRVPYN SSVPKCGDGM EFSVYRDDDE HSSGCTHPST VTTNACRAQH IGDRRVRKLL  300
TSKYWKGDPT MSKDRQLANT DVEMKPIFRS RRMPCRRLRT QRSSFKRKKL FERCSISASD  360
GGIFRDDITN PPAKSGIKLE ASDSPATLRG ANGASSSTTG EKSSYESGDY HVKFSIKSFK  420
VPELFIELPE NATVGSLKRT VLDAVTAFLG GGLRVGVLLQ GKKVRDDSKT LRQANIARAE  480
KLDNLGFTLE PNPRPATAPL TSPDDPHLLH PDDAPEPLAR IAPEKPAPYQ GASDATPQPV  540
LTSAANGPES DRDSVHSPAD APSLDRTRAL VPVPQMNVEA LPVVPLRKSR RSEMVQRRIR  600
RPFSVAEVEA LVQAVEKLGT GRWRDVKLRA FDDAKHRTYV DLKDKWKTLV HTARISPQQR  660
RGEPVPQELL DRVLSAHAYW SQQQAKLQVK PPAQTCLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A9e-565876914108Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292298DRRVRKL
2335349RRLRTQRSSFKRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920568.10.0telomere repeat-binding protein 5 isoform X2
TrEMBLA0A2H3XJI60.0A0A2H3XJI6_PHODC; telomere repeat-binding protein 2
STRINGXP_008784600.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-107TRF-like 2