PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010920571.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 699aa MW: 76985 Da PI: 9.5082 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 600 | 649 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_010920571.1 600 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFddaKHRTYVDLKDKWKTL 649 6789999*******************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 4.14E-5 | 406 | 495 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 14.733 | 595 | 654 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-7 | 599 | 652 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-10 | 600 | 650 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.95E-15 | 601 | 682 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.87E-17 | 601 | 651 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MVLQKRLDYG SSGCQVAAMP HVPRSARGKR SVRKKVEDNR MGAFDLLATV AGRLLSERHN 60 SLTPCNITGT SNPTAGKEII KLEHFKDEKP FKAETFDQGS CDESTLGSDI VIQRQGGYAS 120 KEHSQTPNAT RSSPASAIVK SEKKDSFAGE SIISSTWAER GYSLGTNTIP KKCGTQRCIP 180 GSMESYEYEG DGINTPLQAE WLISGKVIER NAPDMYSSED PMDLDTKPPA LISSDSSAEV 240 PSCRDRVPYN SSVPKCGDGM EFSVYRDDDE HSSGCTHPST VTTNACRAQH IGDRRVRKLL 300 TSKYWKGDPT MSKDRQLANT DVEMKPIFRS RRMPCRRLRT QRSSFKRKKL FERCSISASD 360 GGIFRDDITN PPAKSGIKLE ASDSPATLRG ANGASSSTTG EKSSYESGDY HVKFSIKSFK 420 VPELFIELPE NATVGSLKRT VLDAVTAFLG GGLRVGVLLQ GKKVRDDSKT LRQANIARAE 480 KLDNLGFTLE PNPRPATAPL TSPDDPHLLH PDDAPEPLAR IAPEKPAPYQ GASDATPQPV 540 LTSAANGPES DRDSVHSPAD APSLDRTRAL VPVPQMNVEA LPVVPLRKSR RSEMVQRRIR 600 RPFSVAEVEA LVQAVEKLGT GRWRDVKLRA FDDAKHRTYV DLKDKWKTLV HTARISPQQR 660 RGEPVPQELL DRVLSAHAYW SQQQAKLQVK PPAQTCLLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 9e-56 | 587 | 691 | 4 | 108 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 292 | 298 | DRRVRKL |
2 | 335 | 349 | RRLRTQRSSFKRKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010920568.1 | 0.0 | telomere repeat-binding protein 5 isoform X2 | ||||
TrEMBL | A0A2H3XJI6 | 0.0 | A0A2H3XJI6_PHODC; telomere repeat-binding protein 2 | ||||
STRING | XP_008784600.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-107 | TRF-like 2 |