PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010920554.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRAS

Protein Properties

Length: 756aa MW: 85476.9 Da PI: 6.7975

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010920554.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	397.1	1.8e-121	381	752	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+++d + a +lL+++++++sp+gd +qRla +f+ +L+arla+++ ++y++l +++t+ ++ l+a++l+ ++P+ k+sh XP_010920554.1 381 LRTLLIHCAQAVAADDRRTAGELLKQIRQHSSPTGDGTQRLACCFADGLEARLAGTGRQIYHTLVAKRTT---ATDILKAYHLYLAACPFKKVSH 472 6789***********************************************************99999...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN++Il+ +e+++rvHiiDf+i G+QWp+L+q La R+egpp+lRiTg++ p++g +e++eetg+rLa++A++++vpfe++ +a+++e+ XP_010920554.1 473 FFANHTILKVAEKASRVHIIDFGIYFGFQWPCLIQRLAGRAEGPPKLRITGIDVPQPGfrPTERIEETGRRLADYAKSFQVPFEYQG-IASKWET 566 *****************************************************9*************************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L+++++E+++Vn+ ++ +l+de+v ++s+r++vL+++++++P+++++ + +++++ F++rf eal +ysalfd+le+++pre+e+r XP_010920554.1 567 IRVEDLKIDKDEVVIVNCLYRFRNLVDETVIVDSPRNKVLNTIRKMNPDIFIHGVVNGSYSAPFFVTRFREALFHYSALFDMLETNVPREDEQRL 661 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er l+gr++ nv+aceg+er+er et+++W+ r +aGF+++pl+ +++k+ak +++ + + + ++e+s +l++gWk+r ++++S W+ XP_010920554.1 662 LIERDLFGRDALNVIACEGSERVERPETYKQWQVRNLRAGFTQLPLDPDIMKKAKDKVKTRYHKDFVIDEDSRWLLQGWKGRIIYTLSTWK 752 **********************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	70.739	355	732	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.3E-119	381	752	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MDRGVRELSG LMNGLRYDDI YSGQNNVNGL RFGPSQPSLN HGSRSRMNLT QMFPGTNPIN 60 PEGNPSSAHR SSPGRDSPED FEIFSDISLN YISRMLMEED IDEKVSNYQE ESALRAAEKP 120 FYEILGQKYP PSPDRPPLYS QHGLESPDES SHSNYGNSNS GSNISGVTDN SWAHDFSEYQ 180 QSQAFPASFE HPYRSSLSSS NSVGNVAEAG LDQESLISTG RLPDLLIESL PAWQFRRGVE 240 EARRFLPSND KLTIDLEANG VSSLPQEPKA AGGLVGVKAE EEPEYPVYGS RGRKNLHRED 300 LDLEEGRSNK QSAIYSEGTI RSEMFDLVLL CQGDKCSQKM SDLREAMQNE ANRNTQNEHA 360 KGSSGGKARG KKQTKREVVD LRTLLIHCAQ AVAADDRRTA GELLKQIRQH SSPTGDGTQR 420 LACCFADGLE ARLAGTGRQI YHTLVAKRTT ATDILKAYHL YLAACPFKKV SHFFANHTIL 480 KVAEKASRVH IIDFGIYFGF QWPCLIQRLA GRAEGPPKLR ITGIDVPQPG FRPTERIEET 540 GRRLADYAKS FQVPFEYQGI ASKWETIRVE DLKIDKDEVV IVNCLYRFRN LVDETVIVDS 600 PRNKVLNTIR KMNPDIFIHG VVNGSYSAPF FVTRFREALF HYSALFDMLE TNVPREDEQR 660 LLIERDLFGR DALNVIACEG SERVERPETY KQWQVRNLRA GFTQLPLDPD IMKKAKDKVK 720 TRYHKDFVID EDSRWLLQGW KGRIIYTLST WKPYET

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MDRGVRELSG LMNGLRYDDI YSGQNNVNGL RFGPSQPSLN HGSRSRMNLT QMFPGTNPIN  60
PEGNPSSAHR SSPGRDSPED FEIFSDISLN YISRMLMEED IDEKVSNYQE ESALRAAEKP  120
FYEILGQKYP PSPDRPPLYS QHGLESPDES SHSNYGNSNS GSNISGVTDN SWAHDFSEYQ  180
QSQAFPASFE HPYRSSLSSS NSVGNVAEAG LDQESLISTG RLPDLLIESL PAWQFRRGVE  240
EARRFLPSND KLTIDLEANG VSSLPQEPKA AGGLVGVKAE EEPEYPVYGS RGRKNLHRED  300
LDLEEGRSNK QSAIYSEGTI RSEMFDLVLL CQGDKCSQKM SDLREAMQNE ANRNTQNEHA  360
KGSSGGKARG KKQTKREVVD LRTLLIHCAQ AVAADDRRTA GELLKQIRQH SSPTGDGTQR  420
LACCFADGLE ARLAGTGRQI YHTLVAKRTT ATDILKAYHL YLAACPFKKV SHFFANHTIL  480
KVAEKASRVH IIDFGIYFGF QWPCLIQRLA GRAEGPPKLR ITGIDVPQPG FRPTERIEET  540
GRRLADYAKS FQVPFEYQGI ASKWETIRVE DLKIDKDEVV IVNCLYRFRN LVDETVIVDS  600
PRNKVLNTIR KMNPDIFIHG VVNGSYSAPF FVTRFREALF HYSALFDMLE TNVPREDEQR  660
LLIERDLFGR DALNVIACEG SERVERPETY KQWQVRNLRA GFTQLPLDPD IMKKAKDKVK  720
TRYHKDFVID EDSRWLLQGW KGRIIYTLST WKPYET

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-50	387	753	24	379	Protein SCARECROW
5b3h_D	1e-50	387	753	24	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019706347.1	0.0	scarecrow-like protein 9
Refseq	XP_019706348.1	0.0	scarecrow-like protein 9
Refseq	XP_019706349.1	0.0	scarecrow-like protein 9
Refseq	XP_019706350.1	0.0	scarecrow-like protein 9
Refseq	XP_019706351.1	0.0	scarecrow-like protein 9
TrEMBL	A0A2H3XJ75	0.0	A0A2H3XJ75_PHODC; scarecrow-like protein 9
STRING	XP_008784606.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein