PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920420.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 666aa    MW: 74350 Da    PI: 6.9931
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920420.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.71.3e-1519591656
                    HHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox 16 eelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      lF+++++p++++re L+k+lgL+ rqVk+WFqNrR++ k
  XP_010920420.1 19 HLLFKESPHPDEKQRELLSKQLGLSARQVKFWFQNRRTQIK 59
                    568**********************************9877 PP
2START2114.4e-661763992206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     +a+ a++el+k+a+  ep+Wv+s+    e++n+de++++f+++ +       s+ea+r+sgvv+ +  +lv+ ++d++ qW+e ++    ka+t+
  XP_010920420.1 176 IANLALDELMKMATTLEPLWVRSVetgrEILNYDEYIREFSPEISskgqvrHSIEASRESGVVFLDISRLVKAFMDVN-QWKELFPgmvsKASTI 269
                     6677899***********************************999999******************************.******99999***** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vi sg      g++qlm+aelq+l+p+vp R+f+f+Ry++ql+ ++w+i dvSvd  +++  ++s+v+++++pSg++ie+ +ngh+kvtwvehv
  XP_010920420.1 270 DVIYSGkgesgdGTIQLMFAELQMLTPMVPtREFYFIRYCKQLSPEKWAIIDVSVDKIEENI-DQSLVKCRKRPSGCVIEDQANGHCKVTWVEHV 363
                     ************************************************************98.9******************************* PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++  ++ ++rs+  +gla+ga++w+atlq qce+
  XP_010920420.1 364 ECQKCAIPTMYRSIAMNGLAFGARHWMATLQLQCER 399
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.7E-12465IPR001356Homeobox domain
SuperFamilySSF466892.74E-131266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-141369IPR009057Homeodomain-like
PfamPF000465.7E-132059IPR001356Homeobox domain
PROSITE profilePS5007114.092261IPR001356Homeobox domain
CDDcd000861.63E-122259No hitNo description
PROSITE patternPS0002703659IPR017970Homeobox, conserved site
PROSITE profilePS5084842.001166402IPR002913START domain
SuperFamilySSF559618.52E-32168399No hitNo description
CDDcd088753.65E-111170398No hitNo description
SMARTSM002341.5E-67175399IPR002913START domain
PfamPF018521.3E-54176399IPR002913START domain
Gene3DG3DSA:3.30.530.204.3E-7219371IPR023393START-like domain
SuperFamilySSF559613.71E-12421597No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MLETPVPKTS SHRQHSPFHL LFKESPHPDE KQRELLSKQL GLSARQVKFW FQNRRTQIKA  60
IQERHENSLL KSEIDKLRDE NRAMRQMINK ACCPNCGFAT SSKDTTMTTE EQQLRIEIAR  120
LKAEIEKLRA MQGKVPAEGT ASPSSSFSAG TDQNNRSSLD CYSGFFGLEK SRILEIANLA  180
LDELMKMATT LEPLWVRSVE TGREILNYDE YIREFSPEIS SKGQVRHSIE ASRESGVVFL  240
DISRLVKAFM DVNQWKELFP GMVSKASTID VIYSGKGESG DGTIQLMFAE LQMLTPMVPT  300
REFYFIRYCK QLSPEKWAII DVSVDKIEEN IDQSLVKCRK RPSGCVIEDQ ANGHCKVTWV  360
EHVECQKCAI PTMYRSIAMN GLAFGARHWM ATLQLQCERI VFFMATNVPT KDSNVIPTGV  420
STPAGRKSIL KFSQRMTSSF CLAIGASRNR TWTKASIRSG EDIRFTSRKN VNDPGEPTGV  480
IVCAVSSTWL PVPSMALFDY LRDESRRNEW DIMLAGGPTE TIANLAKGQD RGNSVLVHAT  540
KSADRTSMWV LQDSSTNAYE SMIVYAPVDI EEMQSVMTGC DSSNMAILPS GFSILPDELE  600
TRPLVITSKP EEKATDGGGS LLTVGVQVLA NTSPLAKLTM ESVETASTLI SCTLQNIKKA  660
FQCEDG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920404.10.0homeobox-leucine zipper protein GLABRA 2 isoform X1
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2H3XVD80.0A0A2H3XVD8_PHODC; homeobox-leucine zipper protein GLABRA 2 isoform X1
STRINGXP_008789333.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]